Pairwise Alignments

Query, 441 a.a., C4-dicarboxylate ABC transporter from Pseudomonas fluorescens FW300-N2C3

Subject, 450 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  405 bits (1041), Expect = e-117
 Identities = 217/445 (48%), Positives = 289/445 (64%), Gaps = 9/445 (2%)

Query: 4   SVMVVDDEGSIRSAVEQWLSLSGFQVQLFSRADECLARLPEHFPGVILSDVRMPGLSGLE 63
           SV+ VDD+  IR A+ Q L+L    V  F  A   L  +   + GV+L D  MP ++GLE
Sbjct: 5   SVIFVDDDPHIRQAIAQTLTLEELPVSCFEDAPSALGHINADYDGVVLCDYNMPEMNGLE 64

Query: 64  LLAEVRRRDPDLPVILLTGHGDVPMAVEAMRDGAYDFLEKPFSPEALLGSLRRALDKRTL 123
           +L  +R  D  +PVI+LTG GD+  AV AM+ GAYDF+EKPF  + L+  LR AL+KR L
Sbjct: 65  MLDRLRAIDDTIPVIILTGQGDISTAVTAMQQGAYDFIEKPFDHDELIELLRHALEKRHL 124

Query: 124 VLENRRLHEQADARARLDGTLLGVSRALQNLRRQVLDLAALPVNVLIRGETGSGKELVAR 183
            LENRRL  Q    AR    +LG S  +Q +   +  +  +  N+L+ GETGSGK+ +AR
Sbjct: 125 ALENRRLKAQLRHLARPGPRMLGDSPLMQKVMATIDPILDISANILLHGETGSGKDALAR 184

Query: 184 CLHDFGPRASKPFVALNCAAIPEALFEAELFGHESGAFTGAQGKRIGKLEYADGGTLFLD 243
            +H+   R++  FVA+NC A+PE L E+ELFGHE+GAFTGA+ +RIGK+E+A  GTLFLD
Sbjct: 185 YIHENSGRSAHNFVAINCGAVPENLIESELFGHEAGAFTGAEKRRIGKIEHAHKGTLFLD 244

Query: 244 EIESMPLAQQVKLLRVLQEQKLERLGSNQSIAVDLRIIAATKPDLLDEARAGRFREDLAY 303
           E+ESMP+  QVKLLRVL+EQ++ERLGSN+   VD+RIIAATK DL   +  G FR DL Y
Sbjct: 245 EVESMPMPLQVKLLRVLEEQRVERLGSNKVQEVDVRIIAATKADLKKLSDDGEFRPDLYY 304

Query: 304 RLNIAELRLPPLRERREDIPLLFEHFTHNAAERLGRPTVPLSGPQLSHLLSHDWPGNVRE 363
           RLN+ ++ +PPLRER+EDIPLLF HF   AA R  R ++PL   Q + L+ H WPGNVRE
Sbjct: 305 RLNVVKVDIPPLRERKEDIPLLFHHFVLIAAARYDRESIPLDAGQAARLMQHSWPGNVRE 364

Query: 364 LANVAERQVLGLDQLPTLETEPG--------QSLAAQQEAFEAQCLRAALARHKGDVKAV 415
           L N+AER VL L      E EP         Q+LA   + FE   + +AL    G +K  
Sbjct: 365 LRNLAERYVL-LGPAALDENEPADTANVAGRQTLAEMMDGFERSAIISALNASHGSIKDT 423

Query: 416 LEELQLPRRTFNEKMQRHGLSREMF 440
           + +L + R+T  +KM++HGL +  F
Sbjct: 424 MVQLGIARKTLYDKMRKHGLDKAQF 448