Pairwise Alignments

Query, 441 a.a., C4-dicarboxylate ABC transporter from Pseudomonas fluorescens FW300-N2C3

Subject, 448 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  414 bits (1065), Expect = e-120
 Identities = 219/440 (49%), Positives = 288/440 (65%), Gaps = 3/440 (0%)

Query: 3   DSVMVVDDEGSIRSAVEQWLSLSGFQVQLFSRADECLARLPEHFPGVILSDVRMPGLSGL 62
           ++++ VDDE  +R A  Q L L+ F V  F+ A+  L R+   FPG++++D+RMPG+ G 
Sbjct: 6   ETILFVDDEEPLRHAAAQTLQLAEFDVACFAEAEAALPRIARDFPGILVTDIRMPGMDGT 65

Query: 63  ELLAEVRRRDPDLPVILLTGHGDVPMAVEAMRDGAYDFLEKPFSPEALLGSLRRALDKRT 122
            L+A     DP+ PVIL+TGHGDV +AV++MRDGAYDFLEKP++P  L+ S+RRALDKR 
Sbjct: 66  TLMARALEIDPEFPVILVTGHGDVDLAVQSMRDGAYDFLEKPYAPSRLVASVRRALDKRR 125

Query: 123 LVLENRRLHEQADARARLDGTLLGVSRALQNLRRQVLDLAALPVNVLIRGETGSGKELVA 182
           L L+NR+L      R  ++  L G S  +  LR+Q+  +A    +VLI G+TG+GKE+ A
Sbjct: 126 LTLDNRQLRAAMGRRDPVEARLTGRSAVMVALRQQLRAVAGTDADVLIVGDTGTGKEVAA 185

Query: 183 RCLHDFGPRASKPFVALNCAAIPEALFEAELFGHESGAFTGAQGKRIGKLEYADGGTLFL 242
           R LH    R++ PF  +NCAA+P  L E+ELFGHE+GA+ GA   R GK E A GGT+FL
Sbjct: 186 RALHRASTRSTGPFQHINCAALPADLIESELFGHEAGAYPGAMRARFGKFEAARGGTVFL 245

Query: 243 DEIESMPLAQQVKLLRVLQEQKLERLGSNQSIAVDLRIIAATKPDLLDEARAGRFREDLA 302
           DEI+S+PL  Q KLL  +Q + + RLGSN  + +D+R +AA+K DL  EA A RFR DL 
Sbjct: 246 DEIDSLPLPLQAKLLHAIQNRTVTRLGSNDPVHLDIRFVAASKKDLEAEAAAERFRADLL 305

Query: 303 YRLNIAELRLPPLRERREDIPLLFEHFTHNAAERLGRPTVPLSGPQLSHLLSHDWPGNVR 362
           YRLN+  + LPPL ERREDIPLLF      AA R  +P   +SG  L+ L + DWPGNVR
Sbjct: 306 YRLNVVTVGLPPLAERREDIPLLFAQLATEAAARYKQPAPEISGAILTALAARDWPGNVR 365

Query: 363 ELANVAERQVLGLDQLPTLETEPGQS--LAAQQEAFEAQCLRAALARHKGDVKAVLEELQ 420
           EL N A+R VLGLD L    T  G S  LA +  A E   + A+LA H G +K     L 
Sbjct: 366 ELRNAADRYVLGLD-LALTNTAEGASMGLAERMAAHEKALIAASLAAHGGRLKDTYAALN 424

Query: 421 LPRRTFNEKMQRHGLSREMF 440
           L R+   EKMQ+HGLSR+ F
Sbjct: 425 LSRKALYEKMQKHGLSRDTF 444