Pairwise Alignments

Query, 441 a.a., C4-dicarboxylate ABC transporter from Pseudomonas fluorescens FW300-N2C3

Subject, 441 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  330 bits (847), Expect = 4e-95
 Identities = 192/453 (42%), Positives = 258/453 (56%), Gaps = 34/453 (7%)

Query: 5   VMVVDDEGSIRSAVEQWLSLSGFQVQLFSRADECLARLPEHFPGVILSDVRMPGLSGLEL 64
           + +VDDE  +R ++ QWL+LSG+  + ++ A+E L  +   +PG++LSD++MPG+ G+ L
Sbjct: 7   IAIVDDEQDMRQSISQWLALSGYDTETYASAEEALKGIEAGYPGIVLSDIKMPGMDGMAL 66

Query: 65  LAEVRRRDPDLPVILLTGHGDVPMAVEAMRDGAYDFLEKPFSPEALLGSLRRALDKRTLV 124
           L  +   D  LPVI++TGHGDVPMAVEAMR GA+DFLEKPF+P+ +    +RA D R L 
Sbjct: 67  LKRLMSMDSALPVIMITGHGDVPMAVEAMRLGAFDFLEKPFNPDRMSALAKRASDTRRLT 126

Query: 125 LENRRLHEQADARARLDGTLLGVSRALQNLRRQVLDLAALPVNVLIRGETGSGKELVARC 184
           LENR L  +      L   L+G S A+  LR  +LDL     +VLI GETG+GK LVA  
Sbjct: 127 LENRALRRELGDGTVLMRKLIGASPAMARLREDILDLGQADGHVLIDGETGTGKTLVAHA 186

Query: 185 LHDFGPRASKPFVALNCAAIPEALFEAELFGHESGAFTGAQGKRIGKLEYADGGTLFLDE 244
           LH  GPRA KPFV  +CAA+ +   E  LFG         +G  +  +E A  GTL L++
Sbjct: 187 LHAVGPRAGKPFVVQSCAAVDD--LEKRLFG------PAEEGMPLPLVEQARSGTLCLED 238

Query: 245 IESMPLAQQVKLLRVLQEQKLERLGSNQSIAVDLRIIAATKPDLLDEARAGRFREDLAYR 304
           IE+MP   Q +LL  L         ++ S  ++ RIIA        +    R R DL YR
Sbjct: 239 IEAMPSEVQARLLGQL---------NDTSAGIETRIIAICNLAEDGKTIEDRLRPDLFYR 289

Query: 305 LNIAELRLPPLRERREDIPLLFEHFTHNAAERLGRPTVPLSGPQLSHLLSHDWPGNVREL 364
           L    + LPPLR+R EDI  LF H+     E  G     ++  + + LL   WPGNVR+L
Sbjct: 290 LAAMRITLPPLRQRGEDILTLFSHYADMFCEEYGCDAPQVAAQEAAQLLQAPWPGNVRQL 349

Query: 365 ANVAERQVL----------------GLDQLPTLETEPGQSLAAQQEAFEAQCLRAALARH 408
            NVAER VL                  +  P + TE G+ L    EAFE   +   + RH
Sbjct: 350 INVAERAVLQNRRGSGSITSLLMADNAEMGPAITTE-GKPLKEYVEAFERMLIDNTMRRH 408

Query: 409 KGDVKAVLEELQLPRRTFNEKMQRHGLSREMFL 441
           KG + AV+EEL LPRRT NEKM ++GLSR  +L
Sbjct: 409 KGSIAAVMEELCLPRRTLNEKMAKYGLSRANYL 441