Pairwise Alignments

Query, 441 a.a., C4-dicarboxylate ABC transporter from Pseudomonas fluorescens FW300-N2C3

Subject, 459 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  418 bits (1074), Expect = e-121
 Identities = 221/447 (49%), Positives = 299/447 (66%), Gaps = 11/447 (2%)

Query: 4   SVMVVDDEGSIRSAVEQWLSLSGFQVQLFSRADECLARLPEHFPGVILSDVRMPGLSGLE 63
           SV+++DDE  I + + Q   L G +    +        L   + GV++SDV MP L G+ 
Sbjct: 11  SVLIIDDEPHIGTVLVQLFELEGIKAFATTDPKGIAKLLDRDWAGVVISDVNMPQLDGIS 70

Query: 64  LLAEVRRRDPDLPVILLTGHGDVPMAVEAMRDGAYDFLEKPFSPEALLGSLRRALDKRTL 123
           L+ ++R++DPDLPV+LLTG GD+ MAV A++ GAYDFLEKPF+ E +L  ++RALDKR+L
Sbjct: 71  LMQQIRQQDPDLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVVKRALDKRSL 130

Query: 124 VLENRRLHEQADARARLDGTLLGVSRALQNLRRQVLDLAALPVNVLIRGETGSGKELVAR 183
            LENR+L ++ ++       +LG S  +  +R  +  +   P +VLI GETG+GKELVAR
Sbjct: 131 TLENRKLKKELESHNVPGPRILGHSVGILRMRHIIDQVIDTPADVLIEGETGTGKELVAR 190

Query: 184 CLHDFGPRASKPFVALNCAAIPEALFEAELFGHESGAFTGAQGKRIGKLEYADGGTLFLD 243
            LHD   R    FVA+NC AIPE L E+ELFG E+GAFTG    RIGK EYA+GGTLFLD
Sbjct: 191 YLHDHSSRNQANFVAINCGAIPENLIESELFGAEAGAFTGVDKLRIGKFEYANGGTLFLD 250

Query: 244 EIESMPLAQQVKLLRVLQEQKLERLGSNQSIAVDLRIIAATKPDLLDEARAGRFREDLAY 303
           EIES PL+ QVKLLRVL+++K+ERLGSN+SI +D+R+IAATK DL      G FR+DL Y
Sbjct: 251 EIESTPLSLQVKLLRVLEDRKVERLGSNKSIHLDIRVIAATKVDLKSLCDTGEFRQDLLY 310

Query: 304 RLNIAELRLPPLRERREDIPLLFEHFTHNAAERLGRPTVPLSGPQLSHLLSHDWPGNVRE 363
           RLN+  + +PPLR+RREDIPLLF HF   A+ R  +  + L+  Q + L SHDWPGNVRE
Sbjct: 311 RLNLVTVPIPPLRDRREDIPLLFLHFARMASARYHKALIALNAEQNAILTSHDWPGNVRE 370

Query: 364 LANVAERQVL---------GLDQLPTLETEPGQSLAAQQEAFEAQCLRAALARHKGDVKA 414
           L N+AER VL          L   P+L T    SL  + E FE   +  AL+ +KG +K 
Sbjct: 371 LRNLAERYVLLGGEAAFAGSLGNAPSLHT--SMSLLQRVEFFERVLIEEALSHNKGSIKQ 428

Query: 415 VLEELQLPRRTFNEKMQRHGLSREMFL 441
            +E+L+LPR+T  +KM+++ L R+ ++
Sbjct: 429 TMEQLELPRKTLYDKMRKYDLDRKQYI 455