Pairwise Alignments

Query, 944 a.a., ABC-ATPase UvrA from Pseudomonas fluorescens FW300-N2C3

Subject, 946 a.a., excinuclease ABC subunit A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  963 bits (2489), Expect = 0.0
 Identities = 502/938 (53%), Positives = 671/938 (71%), Gaps = 13/938 (1%)

Query: 4   ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I + GAR HNLK+ID  +PR+ L VITGLSGSGKSSLAFDT++AEGQRRY+E+ SAYAR 
Sbjct: 12  INVYGARVHNLKDIDAEIPRNSLTVITGLSGSGKSSLAFDTIFAEGQRRYIETFSAYARN 71

Query: 64  FLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRCPDH 123
           FL  +E+PDVD I GLSP ISIEQK+T+ NPRSTVGT TEIYDYLRLLYAR GI      
Sbjct: 72  FLGNLERPDVDKITGLSPVISIEQKTTNKNPRSTVGTTTEIYDYLRLLYARAGIAYSYLS 131

Query: 124 DIPLEAQTVSQMVDLVLAQPEGSKLMLLAPVVRERKGEHLMVFEELRAQGFVRARVNGKL 183
              +   T  Q++DL+L   +G K+ LLAP+VR RKG +  +FE++R +G++  R++G+L
Sbjct: 132 GEEMVKYTEEQILDLILKDYKGKKIYLLAPLVRSRKGHYKELFEQVRKKGYLYVRIDGEL 191

Query: 184 CELDELPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDEPGE 243
            E+    KLD+ K H I+VV+D+  V     +RL +S  TA++  DG+ ++     E   
Sbjct: 192 REVTHGMKLDRYKNHDIEVVIDKLIVAEKDDKRLKQSVATAMRQGDGLLMILDAQTESVR 251

Query: 244 EIIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDTKRLV-NGELTLA 302
              +S R  CP+ G +  E  P  FSFN+P GACP C GLGV    D  +++ + EL++ 
Sbjct: 252 H--YSKRLMCPVTGLSYREPAPHNFSFNSPQGACPKCKGLGVVNQIDVDKVIPDRELSIY 309

Query: 303 EGAIRGWDR-RNVYYFQMLGSLAAHYKFSLDKPFNELPADQQKSILHGSGSQ-NVDFKYL 360
           EGAI    + +N   F  +G+L   Y+ +L  P  EL  D  + IL+GS  +  +    +
Sbjct: 310 EGAIAPLGKYKNAMIFWQIGALLEKYEATLKTPVKELSDDAVEEILYGSDDRIKIKSSLI 369

Query: 361 NDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFLSTQPCPDCRGTRLRREARHV 420
               D       +EG+V  ++    +  SA+ ++   +F  T  CP+C+G RL +EA H 
Sbjct: 370 GTSSDYFVT---YEGVVKYIQMLQEKDASATAQKWAEQFARTTVCPECKGARLNKEALHF 426

Query: 421 WVGEKTLPAVTNLPIGDATDYFGGLK--LTGRRGEIADKILKEIRERLQFLVNVGLDYLT 478
            + +K +  + N+ I +  D+   +   L+ ++ +IA +ILKEIR RL+FL++VGLDYL 
Sbjct: 427 RIHDKNINDLANMDINELYDWLMNVDQFLSDKQKKIAAEILKEIRTRLKFLLDVGLDYLA 486

Query: 479 LDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLGTLKHLRDIGN 538
           L+RS+ +LSGGE+QRIRLA+QIG+ LV V+YILDEPSIGLHQRDN RL+ +LK LRD+GN
Sbjct: 487 LNRSSVSLSGGESQRIRLATQIGSQLVNVLYILDEPSIGLHQRDNLRLIRSLKELRDMGN 546

Query: 539 TVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAQGTAAEVMAHPDSLTGKYLSGRVKIK 598
           +VIVVEHD+D +  ADYV+D+GP AG  GG +V  GT +E M   +++T +YL+G +KI+
Sbjct: 547 SVIVVEHDKDMMLAADYVIDMGPKAGRLGGEVVFSGTPSE-MLQTETMTSQYLNGEMKIE 605

Query: 599 VPAKRTPRNKKLSLTLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFPLSA 658
           VPAKR   N K S+ LKGA+GNNL+NVD+E P+G L CVTGVSGSGKSTLIN TL P+ +
Sbjct: 606 VPAKRRKGNGK-SIWLKGAKGNNLKNVDVEFPLGKLICVTGVSGSGKSTLINETLQPILS 664

Query: 659 TALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVP 718
                +   +   +DSI+GLE++DKVVD+DQSPIGRTPRSNPATYTG+F+ IR LF  +P
Sbjct: 665 QKFYRSLQ-DPLEYDSIEGLENIDKVVDVDQSPIGRTPRSNPATYTGVFSDIRNLFVSLP 723

Query: 719 ESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIK 778
           E++ RGY PGRFSFNV GGRCEAC G+G   +EM+FLPD+YVPC+VC  KRYNRETLE++
Sbjct: 724 EAKIRGYKPGRFSFNVSGGRCEACTGNGYKTIEMNFLPDVYVPCEVCHGKRYNRETLEVR 783

Query: 779 YKGKNIHETLEMTIEEARVFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVK 838
           +KGK+I + L+MTI  A  FF+ VP +  K++ L DVGL YIKLGQS+TTLSGGE+QRVK
Sbjct: 784 FKGKSIADVLDMTINRAVEFFENVPQILNKIKVLQDVGLGYIKLGQSSTTLSGGESQRVK 843

Query: 839 LSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTAD 898
           L+ ELSKRDTGKTLYILDEPTTGLHF DI+ L+ VL++L D GNTV+VIEHNLDVIK AD
Sbjct: 844 LATELSKRDTGKTLYILDEPTTGLHFEDIRVLMGVLNKLVDKGNTVIVIEHNLDVIKMAD 903

Query: 899 WLVDLGPEGGSKGGQIIAVGTPEQVAEMKQSYTGYYLK 936
           +++D+GPEGG  GG +++ GTPE+VA+ ++ YT  +L+
Sbjct: 904 YIIDMGPEGGKGGGVLLSYGTPEEVAKSQKGYTPKFLR 941