Pairwise Alignments

Query, 712 a.a., chemotaxis protein from Pseudomonas fluorescens FW300-N2C3

Subject, 705 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  321 bits (823), Expect = 7e-92
 Identities = 223/722 (30%), Positives = 368/722 (50%), Gaps = 29/722 (4%)

Query: 1   MKFKSIQFSVAALAGAIVLSVVAALVLYALFAGARTQEMVQQRTKAQFEQLIEQRLSALA 60
           MK  SI   +  +  A+ L +VA L     ++ +     +  + +        QRLSA A
Sbjct: 1   MKHLSISTKLLWITSALFLIIVAILSFSLWWSLSDKNAQLAGQVQGALHDETRQRLSARA 60

Query: 61  ----RTQASLIQRELEAPLLLARGLATTNALMGINGADGNPQLKVPREQMISLLRETVVR 116
                  A  I      P   A G+   +A       +G        E +  +LR    +
Sbjct: 61  GEYGERVAGFINEAYRIPFSFA-GMIEQSAASQPLSREG------VEESVAGVLR----K 109

Query: 117 NPKILGAYIAWEPNAIDHDDANYVNSPVVGMETSGRFLPWWFRNQDGSLGLEKLADVT-- 174
           N ++   Y  +EPN  D  D +Y       +   G    ++ R+ DGS+  +++ D +  
Sbjct: 110 NSQLSSMYAQFEPNGYDGRDGDYTQKISHSVPEVGTLEIYYTRSDDGSVEHQQVDDASEK 169

Query: 175 -DQKLLSTGIRASEYYLCSQDSKKACVIDPAPYRVGSTMT-MLASFIEPIMIDGKFQGIV 232
            D  L   G+R +E+YLC++D+K+ C+++P  Y +    T ++ S   P+++ G F+G++
Sbjct: 170 YDATLKEFGVREAEWYLCAKDTKQPCLMEPYLYEISPGNTALMTSLTVPVVVGGSFRGVI 229

Query: 233 GADLSVNFIQDMLVAADGKLYDGAGEMALLSSNNRLVA---FTKDPSKLGEKASDLLDAS 289
           G D+++   Q ++      LY G  ++ LLS    +VA   + K    LGE  +  L AS
Sbjct: 230 GVDVNLPVFQKLIDELSASLYQGKAKVTLLSQKGLVVAASHYDKKARPLGESIAPSL-AS 288

Query: 290 ELDNLAKLGVGEVRYDIDEEHGHIEVYMPFGIGETNARWTLMLQLPLNAVMADLQALQQD 349
           +L  L + G         E+  +I V  P  I    A+W+L++++          A+ + 
Sbjct: 289 QLTGLHRQG------GYLEQGDNIIVAYPIEIPLAKAQWSLVIEVAKADAYQAANAMDKA 342

Query: 350 LDHQRQADIFGMAMVGLVIAGIGLLVIWLVGHGIARPLKQMVAMLDDIAQGEGDLTRRLV 409
           +     +    + +VG++++ I ++ I LV   I  PLK + + ++++A  EGDLT+++ 
Sbjct: 343 MSAMASSLGSLLLIVGVIVSLIAVVTISLVIRSIVAPLKVIQSRVENLASAEGDLTQQVT 402

Query: 410 SDRADELGAIARGFNTFLSKLQGMITQVVTSVQSVSDSSEHTADIAIRTNQGVHKQMSEI 469
            +   EL A+  G N F++KL+ +I ++          S+  A+IA +T+  V++Q S+I
Sbjct: 403 VESHAELIALGGGINGFINKLRLLIGELKELASRSQAESQVAAEIAQQTHNSVNRQYSDI 462

Query: 470 DQVATAVHEMTATAQDVARNATQAAQAASHADQAASQGMQIVRDTSTSIGALAVEIGKAV 529
           + V TAV+EM+ATA +VA+ + Q A            G   +      +  ++ E   A 
Sbjct: 463 ESVVTAVNEMSATALEVAKASEQTASETEAMTLNVKAGEDSLSQAMGYVTHMSQESLLAK 522

Query: 530 GVVQTLAKDSENINAILTAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQ 589
             V  +A+ S NI+ IL  I  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA 
Sbjct: 523 EAVGKVAESSTNISKILEVISAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAS 582

Query: 590 KTQQATEEIQAMIQQLQQGTRDVVRVMEDSQHRTDESVQHAAKAAQALETITQAVSVIND 649
           KTQ +T+EI  +I+ LQ+      ++++        +V     A  +L TI   +  ++ 
Sbjct: 583 KTQSSTDEIGKLIEALQREVNSASQIIDQGVDGAQRAVAQTESALSSLNTIVNQIQEVSS 642

Query: 650 MNTQIASAAEEQSAVADDINRNVINIGQVANEVASGADESSAASAGLTKLAEQQRRLINQ 709
             T IA+AAEEQSAV ++++RN+  I   A+E+A  ADE+  +SA L  L EQQ + + +
Sbjct: 643 QVTHIATAAEEQSAVTEEVSRNITGISDSASELARLADEAQQSSASLAGLVEQQHQQLGK 702

Query: 710 FR 711
            +
Sbjct: 703 LK 704