Pairwise Alignments

Query, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas fluorescens FW300-N2C3

Subject, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Shewanella amazonensis SB2B

 Score =  629 bits (1622), Expect = 0.0
 Identities = 314/572 (54%), Positives = 426/572 (74%), Gaps = 5/572 (0%)

Query: 2   RIEPRQLPDTLPFLGDLPPLLTRLYAARGVQSEAELDKSLARLIPFQQLKGIDAAVDLLV 61
           ++  R+  D       L PL+ +L A RGV  + + ++ L+RL+  + + G+D A  LL 
Sbjct: 4   KLTRRETVDDSHLPNHLHPLIKQLLARRGVAGD-DCEQELSRLLRPETMLGLDRAACLLA 62

Query: 62  TALEQRQRILIVGDFDADGATASTVGMLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVA 121
            A    +R+LIVGDFDADGAT+++V +L L++LG    D+L+PNRF+YGYGL+  +V +A
Sbjct: 63  DAAMASKRMLIVGDFDADGATSTSVCLLALKMLGIHGADFLIPNRFDYGYGLSVPLVALA 122

Query: 122 LARAPQLLITVDNGISSVEGVAAAKAAGLQVLVTDHHLPGLELPAADAIVNPNQPGCEFP 181
           + +  ++LITVDNGISS+EGVAAAKAAG+QV++TDHHLPG  LP ADAIVNPNQ GC F 
Sbjct: 123 VEKGAEVLITVDNGISSIEGVAAAKAAGMQVVITDHHLPGQVLPDADAIVNPNQQGCTFA 182

Query: 182 SKALAGVGVIFYVLMALRARLRSLGWYAST--PQPNIGELLDLVALGSVADVVPLDANNR 239
           SK++AGVGV FY+++ALRA LR  GW+      +PN+  L+D+VALG+VADVV LDANNR
Sbjct: 183 SKSIAGVGVAFYLMLALRAELRRRGWFEKLGIKEPNLAVLVDIVALGTVADVVSLDANNR 242

Query: 240 ILVHQGLERIRAGRARPGIKAILEVAKRDASRITSTDLGFILGPRLNAAGRLDDMSLGIE 299
           ILV  GL+R+RAGR RPGI A+LEVAKR+ +R  + D GF +GPRLNAAGRLD+MSLG+E
Sbjct: 243 ILVDAGLKRVRAGRCRPGITALLEVAKRNPARAVAADFGFAVGPRLNAAGRLDEMSLGVE 302

Query: 300 CLLTDDPALAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPVES--MPFGLCLFDPQW 357
            LL DD   AR MAA+LDG+NQ+R+ +E GMQ EAL  L+ L +E   +P+G+ L+   W
Sbjct: 303 TLLCDDIMYARRMAAELDGLNQERRELETGMQAEALKSLERLQLEESQLPWGIALYQDDW 362

Query: 358 HQGVIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVPGFHIRDALSVVAAQHPTLISK 417
           HQGVIGILASR+K++Y RP IAFA+A D  +KGS RS+ G H+RD L +++++HP LI K
Sbjct: 363 HQGVIGILASRIKDKYHRPVIAFAEASDNEVKGSARSIKGLHMRDLLELISSRHPGLIPK 422

Query: 418 YGGHAMAAGLTLPEANFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARAL 477
           +GGHAMAAGL+L +A+   F   FD  VR  L  E LTG +LSDG L +E   LE A  +
Sbjct: 423 FGGHAMAAGLSLAKADVSKFQTVFDDTVRELLSPELLTGEILSDGELPIEYLTLETANLI 482

Query: 478 RHAGPWGQHFPEPMFHGVFQLVEQRVVGERHLKVILKSECGSVKLDGIAFGIDREIWPNP 537
           R +GPWGQ F EP+F G F+L++QR+VGE+HLK+++++ECG + LD IAF +D ++WP+ 
Sbjct: 483 RASGPWGQGFEEPLFDGHFRLLQQRLVGEKHLKMMVETECGRLMLDAIAFNVDLKLWPDA 542

Query: 538 TVRWVELAYKLDLNEFRGQETVQLMIAHIEPR 569
           TVR V LAY+LD+NEFRG +++QL++  I+ +
Sbjct: 543 TVRHVHLAYRLDVNEFRGNQSLQLLVEQIDAK 574