Pairwise Alignments

Query, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas fluorescens FW300-N2C3

Subject, 580 a.a., single-stranded-DNA-specific exonuclease RecJ from Phaeobacter inhibens DSM 17395

 Score =  259 bits (661), Expect = 3e-73
 Identities = 199/560 (35%), Positives = 295/560 (52%), Gaps = 34/560 (6%)

Query: 18  LPPLLTRLYAARGVQSEAE---LDKSLARLIPF-QQLKGIDAAVDLLVTALEQRQRILIV 73
           LP  + ++ A RGV S      L   L  L+P  +++K ++ A    + A+E+ +RI + 
Sbjct: 35  LPAAVCQVLARRGVPSHEASGFLTPQLKELLPDPRRMKDMEPAAARFLQAVERCERIAVF 94

Query: 74  GDFDADGATASTVGMLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALARAPQLLITVD 133
            D+D DG +++ + ++ L  +G +   Y VP+R + GYG   +    ALAR   L++ VD
Sbjct: 95  ADYDVDGGSSAALLLVWLNQVGLSATLY-VPDRIDEGYGPN-DAAMAALAREHDLIVCVD 152

Query: 134 NGISSVEGVAAAKAAGLQVLVTDHHLPGLELPAADAIVNPNQPGCEFPSKALAGVGVIFY 193
            G  S   +AAAK  G  V+V DHHL G  LP   A+VNPN+   +         GV+F 
Sbjct: 153 CGTLSHGPIAAAK--GADVIVLDHHLGGETLPDCVAVVNPNRQDEDGDLGYFCAAGVVFL 210

Query: 194 VLMALRARLRSLGWYASTPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGR 253
           +L+ LR ++R  G       P++  LLDLVAL +VADV PL   NR LV QGL ++ A R
Sbjct: 211 MLVELRRQMRDKGLGTG---PDLMALLDLVALATVADVAPLIEANRALVRQGL-KVMATR 266

Query: 254 ARPGIKAILEVAKRDASRITSTDLGFILGPRLNAAGRLDDMSLGIECLLTDDPALAREMA 313
            RPG+ A+ +V++ D++  T   LGF+LGPR+NA GR+    LG   L T DPA A  +A
Sbjct: 267 QRPGLVALADVSRMDSAPSTY-HLGFLLGPRVNAGGRIGKADLGARLLATSDPAEAEAIA 325

Query: 314 AQLDGMNQDRKSIEQGMQREALAQLK----DLPVESMPFGLCLFDPQWHQGVIGILASRM 369
           A+LD +N +R+ IE  ++  AL Q +    D P+      +      WH GV+GI+ASR+
Sbjct: 326 ARLDELNTERRDIENAVRAAALEQAEARGLDAPL------VWAAGEGWHPGVVGIVASRL 379

Query: 370 KERYFRPTIAFADAGDGLLKGSGRSVPGFHIRDALSVVAAQHPTLISKYGGHAMAAGLTL 429
           KE   RP I     GD   KGSGRSV G  +  ++   AA+   L+ K GGH MAAGLT+
Sbjct: 380 KEAAGRPAIVIGLDGDE-GKGSGRSVSGIDLGASIQRAAAE--GLLIKGGGHKMAAGLTV 436

Query: 430 PEANFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPE 489
                          + +Q   +     L  DG L      + L   +  AGP+G   P 
Sbjct: 437 ARDQLEPAMARLSELLAKQGAGDLGPSDLKLDGMLMPGAATVPLIEQIEQAGPFGAGAPA 496

Query: 490 PMF-HGVFQLVEQRVVGERHLKVILKSECGSVKLDGIAFG-----IDREIWPNPTVRWVE 543
           P +     Q+   + VGE HLK+ L S+  S  +D I FG     +   +  +   R+  
Sbjct: 497 PRYGFPDLQVRFAKRVGESHLKLSL-SDGLSSGIDAICFGAFDTALGSRLLDHGGARF-H 554

Query: 544 LAYKLDLNEFRGQETVQLMI 563
            A +L++N + G+++VQL +
Sbjct: 555 FAGRLEINTWGGRQSVQLRL 574