Pairwise Alignments

Query, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas fluorescens FW300-N2C3

Subject, 565 a.a., single-stranded-DNA-specific exonuclease RecJ from Dechlorosoma suillum PS

 Score =  558 bits (1438), Expect = e-163
 Identities = 299/553 (54%), Positives = 378/553 (68%), Gaps = 12/553 (2%)

Query: 18  LPPLLTRLYAARGVQSEAELDKSLARLIPFQQLKGIDAAVDLLVTALEQRQRILIVGDFD 77
           L PLL R+YAARG++ +AELD  L  LIP  QL G + A  LL  A+E   RIL+VGD+D
Sbjct: 22  LHPLLARIYAARGIKHKAELDYDLKSLIPPSQLTGTEEAAILLADAIEAEARILVVGDYD 81

Query: 78  ADGATASTVGMLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALARAPQLLITVDNGIS 137
            DGATA+ V +  LRLLG   VDYLVP+RF +GYGL+P+IVE+A  R P LL+TVDNGI+
Sbjct: 82  CDGATATAVAVRALRLLGGT-VDYLVPDRFVHGYGLSPQIVELAAERQPDLLVTVDNGIA 140

Query: 138 SVEGVAAAKAAGLQVLVTDHHLPGLELPAADAIVNPNQPGCEFPSKALAGVGVIFYVLMA 197
           S+EGV AA+  G+  L+TDHHLP   LP AD IVNPNQPGC FPSKALAGVGV+FYV +A
Sbjct: 141 SIEGVEAARQLGIATLITDHHLPAETLPEADCIVNPNQPGCTFPSKALAGVGVMFYVALA 200

Query: 198 LRARLRSLGWYA-STPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGRARP 256
           LRA +R  G +    P+PN   LLDLVALG+VADVV LD NNRILV QGL+R+R G+  P
Sbjct: 201 LRAEMRRRGAFGPERPEPNFSCLLDLVALGTVADVVKLDHNNRILVAQGLKRMREGKLTP 260

Query: 257 GIKAILEVAKRDASRITSTDLGFILGPRLNAAGRLDDMSLGIECLLTDDPALAREMAAQL 316
           GI+A+   A R+    ++ DLGF +GPRLNAAGRL DMSLGIECL+TDD A A  +A QL
Sbjct: 261 GIRALFRAAGRNLQTASAFDLGFTVGPRLNAAGRLSDMSLGIECLITDDEARAANIAQQL 320

Query: 317 DGMNQDRKSIEQGMQREALAQLKDLPVESMPFGLCLFDPQWHQGVIGILASRMKERYFRP 376
           D +N++R+ IE GMQ +AL  L++  +E+   G+ LFDP WHQGV+GILASR+KE+  RP
Sbjct: 321 DQLNRERREIEAGMQEQALIHLENFDLEASGAGVALFDPDWHQGVVGILASRIKEKLHRP 380

Query: 377 TIAFADAGDGLLKGSGRSVPGFHIRDALSVVAAQHPTLISKYGGHAMAAGLTLPEANFPL 436
             AFA   DG +KGSGRS+PG H+RDAL +V+ + P ++ ++GGHAMAAG TL E  F  
Sbjct: 381 VFAFARGDDGQIKGSGRSIPGLHLRDALDLVSKRAPGILLRFGGHAMAAGATLMEERFEE 440

Query: 437 FAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGP-WGQHFPEPMFHGV 495
           F   F       L   DLT  L +DG L      L++A  L  AG  WGQ FP P+F  V
Sbjct: 441 FKSLFAQVADELLNPADLTRTLETDGALEAGYISLQVAEML--AGEVWGQGFPAPLFEDV 498

Query: 496 FQLVEQRVVGERHLKVILKSECGSVKLDGIAFGIDREIWPNPTVRWVELAYKLDLNEFRG 555
           F++  QRV+ ++HLK+ LK E     L+ I F       P P  R   LAY+L +N++ G
Sbjct: 499 FEVESQRVLKDKHLKLRLKKE--RSVLEAIQFNATEN--PGPRAR---LAYRLTINDYNG 551

Query: 556 QETVQLMIAHIEP 568
            +T QL++ H  P
Sbjct: 552 VQTPQLVVEHCAP 564