Pairwise Alignments

Query, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas fluorescens FW300-N2C3

Subject, 571 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  262 bits (670), Expect = 2e-74
 Identities = 200/558 (35%), Positives = 287/558 (51%), Gaps = 29/558 (5%)

Query: 17  DLPPLLTRLYAARGVQSEAE----LDKSLARLIPFQQLKGIDAAVDLLVTALEQRQRILI 72
           ++  L+ RL   RGV S  +    L  +L  L P  +  G++ A   L   L       +
Sbjct: 26  EVSELIVRLLWRRGVGSVDDMALYLSPNLRHLAPLAEWPGLEQAASTLADGLLAGLPFAV 85

Query: 73  VGDFDADGATASTV--GMLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALARAPQLLI 130
            GD+D DG T++ +  G+L    + AAH    +P+R E GYGL    VE    +  +LL+
Sbjct: 86  WGDYDVDGVTSTALVKGVLAQHGMAAAHH---IPDRREEGYGLNVAWVERLAEQGVRLLL 142

Query: 131 TVDNGISSVEGVAAAKAAGLQVLVTDHHLPGLELPAADAIVNPNQPGCEFPSKALAGVGV 190
           TVD GIS VE V  A+  G+ V+V+DHH+P   LP A+AI NP    C  P  ALAGVGV
Sbjct: 143 TVDCGISDVEPVRRARELGMTVVVSDHHMPPEGLPDANAICNPRLAEC--PCPALAGVGV 200

Query: 191 IFYVLMALRARLRSLGWYASTPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIR 250
            F V+ A+ A L       +  + ++ + LDLVALG++ADVV L   NRILV  GL +I 
Sbjct: 201 SFLVMAAVNAALAE----RTGKKADMRDFLDLVALGTLADVVNLHGQNRILVKNGLLKIA 256

Query: 251 AGRARPGIKAILEVA-KRDASRITSTDLGFILGPRLNAAGRLDDMSLGIECLLTDDPALA 309
             R RPG+ A+  V+     + I +  + F L PR+NAAGR+    L ++ LLTDD A A
Sbjct: 257 EAR-RPGMAALKTVSGYNPTAAIGAGQVVFGLAPRINAAGRMGKAELALQLLLTDDHAEA 315

Query: 310 REMAAQLDGMNQDRKSIEQGMQREALAQLKDLPVESMPFGLCLFDPQWHQGVIGILASRM 369
             +A +LD  N  R++ E  +   A  Q +    +    GL L    WH GVIGI+ASR+
Sbjct: 316 ARLAQELDAENARRRAEEDRILDAAKKQAEG---QLDRMGLVLHGDDWHPGVIGIVASRI 372

Query: 370 KERYFRPTIAFADAGDGLLKGSGRSVPGFHIRDALSVVAAQHPTLISKYGGHAMAAGLTL 429
            + ++RPT+  +  G   +KGSGRSV  F +   L+  A     L + +GGH  AAG+++
Sbjct: 373 VDEFYRPTLILSSDGQS-MKGSGRSVAEFDLHAGLTRCA----DLFTAFGGHHQAAGMSM 427

Query: 430 PEANFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVE-EFHLELARALRHAGPWGQHFP 488
           P ++     E FDA VR +L +  LT RL  DG L         L + L    P+G    
Sbjct: 428 PASHVDTLRERFDAVVRAELGDTPLTPRLKLDGELGFALAGDFTLLKELEMLQPFGTGNA 487

Query: 489 EPMFHGVFQLV-EQRVVG--ERHLKVILKSECGSVKLDGIAFGIDREIWPNPTVRWVELA 545
           EP+F     LV + R  G    H+++ L  E   + L   A+    +   +     V LA
Sbjct: 488 EPVFASPPVLVRDLRRFGPTRDHVELQLTDESCGITLRAKAWRQSGQFPDSLRGTRVRLA 547

Query: 546 YKLDLNEFRGQETVQLMI 563
           Y   ++ + G  +V L I
Sbjct: 548 YTPRIDRYNGAASVDLRI 565