Pairwise Alignments

Query, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas fluorescens FW300-N2C3

Subject, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Shewanella sp. ANA-3

 Score =  665 bits (1717), Expect = 0.0
 Identities = 330/555 (59%), Positives = 428/555 (77%), Gaps = 5/555 (0%)

Query: 18  LPPLLTRLYAARGVQSEAELDKSLARLIPFQQLKGIDAAVDLLVTALEQRQRILIVGDFD 77
           LPPLL +LYA RGV    E +  L  L+    +KG++ A  L+  A++Q + ILIVGDFD
Sbjct: 20  LPPLLRQLYARRGVMPN-ECELVLKGLLRPDTMKGLELAAKLIADAMQQEKSILIVGDFD 78

Query: 78  ADGATASTVGMLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALARAPQLLITVDNGIS 137
           ADGAT+++V +L LR++GA+ VDYL+PNRF+YGYGL+PEIV VA ++  +LLITVDNGIS
Sbjct: 79  ADGATSTSVCLLALRMMGASKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITVDNGIS 138

Query: 138 SVEGVAAAKAAGLQVLVTDHHLPGLELPAADAIVNPNQPGCEFPSKALAGVGVIFYVLMA 197
           S+EGVAAAKA G+QV++TDHHLPG ELP ADAIVNPNQPGC+F SK++AGVGV FY++ A
Sbjct: 139 SIEGVAAAKAFGMQVVITDHHLPGHELPDADAIVNPNQPGCQFASKSIAGVGVAFYLMTA 198

Query: 198 LRARLRSLGWYAST--PQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGRAR 255
           LRA LR+  WY +    +PN+G LLD+VALG+VADVV LDANNRILV  GL R+R+GR R
Sbjct: 199 LRAELRARHWYQARGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLARVRSGRCR 258

Query: 256 PGIKAILEVAKRDASRITSTDLGFILGPRLNAAGRLDDMSLGIECLLTDDPALAREMAAQ 315
            GI A+LEVAKR+ +RI ++D GF +GPRLNAAGRLD+M+LG+E LL +D   AR MAA+
Sbjct: 259 VGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMYARRMAAE 318

Query: 316 LDGMNQDRKSIEQGMQREALAQLKDLPV--ESMPFGLCLFDPQWHQGVIGILASRMKERY 373
           LD +NQ+R+ +E GMQ+EAL  L+ L +  E +P+G+ LF   WHQGVIGILASR+K++Y
Sbjct: 319 LDSLNQERRELEVGMQQEALKSLEYLKLNEEQLPWGIALFQEDWHQGVIGILASRIKDKY 378

Query: 374 FRPTIAFADAGDGLLKGSGRSVPGFHIRDALSVVAAQHPTLISKYGGHAMAAGLTLPEAN 433
            RP IAFADAG+G +KGS RS+ G H+RD L +V ++HP LISK+GGHAMAAGLTL    
Sbjct: 379 HRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNSRHPGLISKFGGHAMAAGLTLKSGG 438

Query: 434 FPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPMFH 493
           F  FA+A+D  VR  L+ E LTG L SDG L   E  LE+A+ LR+AGPWGQ F EP+F 
Sbjct: 439 FATFAKAYDDAVRELLKPEQLTGELWSDGELTPTELTLEIAQLLRNAGPWGQSFEEPLFD 498

Query: 494 GVFQLVEQRVVGERHLKVILKSECGSVKLDGIAFGIDREIWPNPTVRWVELAYKLDLNEF 553
           G F++++QR+VGERHLK++L++ C +V LD IAF +D   WP+ T++   + YKLD+NE+
Sbjct: 499 GYFKIIQQRIVGERHLKLVLETPCSTVMLDAIAFNVDLHTWPDATIQHARIVYKLDVNEY 558

Query: 554 RGQETVQLMIAHIEP 568
           RG  T+QLM+  IEP
Sbjct: 559 RGNFTLQLMVEQIEP 573