Pairwise Alignments

Query, 464 a.a., Fis family transcriptional regulator from Pseudomonas fluorescens FW300-N2C3

Subject, 486 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  335 bits (860), Expect = 2e-96
 Identities = 202/486 (41%), Positives = 281/486 (57%), Gaps = 37/486 (7%)

Query: 4   KVLLVEDDRALREALADTLVLAGHDYAAVGSAEEALQAVGREAFSLVVSDVNMPGMDGHQ 63
           K+L+V+D+  LR++    L   GHD  A  + E+ ++ V  E   LV+ DV MPGMDG  
Sbjct: 3   KILIVDDELQLRQSFQRLLAGEGHDVRAASTGEQGIKLVREELPELVIMDVRMPGMDGLT 62

Query: 64  LLGLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFE----------------- 106
            L  +R    +LPV++MTA+   E A++A + GA DY++KPFE                 
Sbjct: 63  ALRAIREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDILALIEQAVEAGRR 122

Query: 107 PKALLDLVARHALGS-LAVEGEGPVAIEPASAQLLELASRVARSDSTVLISGESGTGKEV 165
            +A +D+VA    G+     GE  V    A  Q+ +   R A +D+ VL+ GESGTGKE+
Sbjct: 123 MRARVDMVADGDDGTGQETLGEALVGTSRAMHQVYKAIGRAAPTDALVLVRGESGTGKEL 182

Query: 166 LARYIHQQSRRAGEPFIAINCAAIPDNMLEATLFGHEKGSFTGAIAAQAGKFEQADGGTI 225
           +AR ++Q S R  +PF+ INC AIPD +LE+ LFG+EKG+FTGA   + GK EQA+GGT+
Sbjct: 183 VARAVYQHSLRGEKPFLIINCVAIPDTLLESELFGYEKGAFTGATNRRVGKIEQANGGTV 242

Query: 226 LLDEISEMPLGLQAKLLRVLQEREVERVGARKPISLDIRVVATTNRDLAGEVAAGRFRED 285
            LDEI +MPLG+QAKLLR+LQE+++ER+G R+PI +D+R++A TN DL   VA GRFRED
Sbjct: 243 FLDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIPVDVRIIAATNTDLEAAVADGRFRED 302

Query: 286 LYYRLSVFPLAWRPLRERTADILPLAERLLNKHVNKMKHAAARLSAEARACLVAYPWPGN 345
           LYYRL V  L   PLRER+ DI PLA   L +   +M      ++ EA A L A PWPGN
Sbjct: 303 LYYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREMDMPNPGITPEALAYLEAQPWPGN 362

Query: 346 VRELDNAIQRALILQQGGLIQPEDFCLA------------GPVACAPLPALAPAPTATPV 393
           VREL N++ +AL+  +GG +   D   A            GP     L A          
Sbjct: 363 VRELGNSVHKALVFSRGGPLGEPDLKQALEASRGVRPGSEGPACDLSLAADQTMQELIRR 422

Query: 394 PPMDVEGDSV-GALGDDLRRREFQMIIDTLRAERGRRKEAAERLGISPRTLRYKLAQMRD 452
              + +GD+V  +L D + R    ++ + L    G R  AA  LG+S  TL   LA++  
Sbjct: 423 TLSESDGDNVFDSLMDHVGR---LVVREALHLTGGNRTRAARLLGLSRPTL---LAKIEK 476

Query: 453 AGMDVE 458
            G+ +E
Sbjct: 477 YGLRIE 482