Pairwise Alignments

Query, 464 a.a., Fis family transcriptional regulator from Pseudomonas fluorescens FW300-N2C3

Subject, 491 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  310 bits (795), Expect = 5e-89
 Identities = 183/429 (42%), Positives = 254/429 (59%), Gaps = 24/429 (5%)

Query: 1   MAIKVLLVEDDRALREALADTLVLAGHDYAAVGSAEEALQAVGREAFSLVVSDVNMPGMD 60
           M  ++L+++D+  +R +L   L   G +     S E+ L  + RE   LV  D+ MPGMD
Sbjct: 1   MHARILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARETPDLVFLDIWMPGMD 60

Query: 61  GHQLLGLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALLDLVARHAL- 119
           G  +L  L A++P LPV++++ HG +E AV+A+R+GA D++ KP   + +L + A+ AL 
Sbjct: 61  GLAVLDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVL-IAAQRALE 119

Query: 120 -GSLAVEGEG-----PVAI-------EPASAQLLELASRVARSDSTVLISGESGTGKEVL 166
            G L  E E      P A         P    L    +RVA +D+ VLI+GE+GTGKE+ 
Sbjct: 120 YGDLRRENEALRDSLPTAHADEMNGRSPVMETLRGQIARVAPTDAWVLITGENGTGKELA 179

Query: 167 ARYIHQQSRRAGEPFIAINCAAIPDNMLEATLFGHEKGSFTGAIAAQAGKFEQADGGTIL 226
           AR IH  SRRA  P +A+NCAAIP+ ++E+ LFGHEKG+FTGA +A+AGKFE A  GT+ 
Sbjct: 180 ARAIHAGSRRADRPLVAVNCAAIPEELIESELFGHEKGAFTGADSAKAGKFEMAHKGTLF 239

Query: 227 LDEISEMPLGLQAKLLRVLQEREVERVGARKPISLDIRVVATTNRDLAGEVAAGRFREDL 286
           LDEI +M L  QAK+LR+LQE++ ERVG  + + +D+RV+A TN++L  E+AAG FREDL
Sbjct: 240 LDEIGDMSLKTQAKILRILQEQQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGTFREDL 299

Query: 287 YYRLSVFPLAWRPLRERTADILPLAERLLNKHVNKMKHAAARLSAEARACLVAYPWPGNV 346
           YYRL VFPL   PLRER  D+  L +    +         A  + +A+  L  YPWPGNV
Sbjct: 300 YYRLRVFPLVLPPLREREGDVPLLIDLFAQRLARDYGVRPATFAPDAQEALARYPWPGNV 359

Query: 347 RELDNAIQRALILQQG-----GLIQPEDFCLAGPVACAPLPALAPAPTATPVPPMDVEGD 401
           REL N ++R LIL  G      ++ PE      P + A +     A TA         G 
Sbjct: 360 RELRNFVERMLILHAGLEVTRSMLPPEFL----PRSGAGMNGSPGAATAAGGRAASGTGG 415

Query: 402 SVGALGDDL 410
           + G  GD L
Sbjct: 416 ATGQGGDPL 424