Pairwise Alignments

Query, 464 a.a., Fis family transcriptional regulator from Pseudomonas fluorescens FW300-N2C3

Subject, 452 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  303 bits (777), Expect = 6e-87
 Identities = 188/456 (41%), Positives = 261/456 (57%), Gaps = 23/456 (5%)

Query: 5   VLLVEDDRALREALADTLVLAGHDYAAVGSAEEALQAVGREAFSLVVSDVNMPGMDGHQL 64
           VLLVED+ ++   +   L  AG++ A  G AE+A Q + +  F LV++D+ +PGM+G +L
Sbjct: 6   VLLVEDELSMLLGMQHALSQAGYEVATAGDAEKAQQLLRQRPFDLVITDLRLPGMNGMEL 65

Query: 65  LGLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALLDLVARH------A 118
           L  +    P   V+L+TA   VE AV A++ GA D+L KPF    LL  V R+       
Sbjct: 66  LEGICELYPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFPRDGLLIAVERYFRFLDLK 125

Query: 119 LGSLAVEGEGP----VAIEPASAQLLELASRVARSDSTVLISGESGTGKEVLARYIHQQS 174
             +  + GE      +   P   ++ E    +A S   VL+ G SG+GKE++A  +H+ S
Sbjct: 126 RENARLRGERDDGEFIGESPMMLKVFERIRAIAGSCVPVLVLGPSGSGKELVAGALHRLS 185

Query: 175 RRAGEPFIAINCAAIPDNMLEATLFGHEKGSFTGAIAAQAGKFEQADGGTILLDEISEMP 234
           +R  +PFI INCAA+P+++LE+ LFGHEKG+FTGA  A+ GKFE ADGGT+  DE  EMP
Sbjct: 186 KRRDKPFIKINCAALPEHLLESELFGHEKGAFTGAQQARKGKFEAADGGTLFFDEAGEMP 245

Query: 235 LGLQAKLLRVLQEREVERVGARKPISLDIRVVATTNRDLAGEVAAGRFREDLYYRLSVFP 294
           L +QAKLLRVL+++EV  VG   P  +D+R V  T RDL   + AG FREDLYYR++V P
Sbjct: 246 LAVQAKLLRVLEDQEVTPVGGNMPRKVDVRTVFATARDLEEAIGAGTFREDLYYRINVVP 305

Query: 295 LAWRPLRERTADILPLAERLLNKHVNKMKHAAARLSAEARACLVAYPWPGNVRELDNAIQ 354
           +   PLRER  D+  LAER L +   +        S +AR  L+AY +PGNVREL NAI+
Sbjct: 306 VTLPPLRERGGDVALLAERFLRRFCAQHDRQVT-FSEQARNALLAYDYPGNVRELRNAIE 364

Query: 355 RALILQQGGLIQPEDFCLAGPVACAPLPALAPAPTATPVPPMDVEGDSVGALGDDLRRRE 414
           RA+IL           C    +    LP      T         E   V  L D + + E
Sbjct: 365 RAVIL-----------CAEDKIHVGHLPKRIRDATQASQEQQPEETRFV-QLADGVAQFE 412

Query: 415 FQMIIDTLRAERGRRKEAAERLGISPRTLRYKLAQM 450
            + I++ L+   GRR  AAE LGI+ + L  KL ++
Sbjct: 413 KKRILEALQKTGGRRIRAAELLGITRKQLWLKLKEL 448