Pairwise Alignments

Query, 464 a.a., Fis family transcriptional regulator from Pseudomonas fluorescens FW300-N2C3

Subject, 456 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  309 bits (791), Expect = 1e-88
 Identities = 188/469 (40%), Positives = 262/469 (55%), Gaps = 43/469 (9%)

Query: 4   KVLLVEDDRALREALADTLVLAGHDYAAVGSAEEALQAVGREAFSLVVSDVNMPGMDGHQ 63
           ++L+V+DD   R  L   L   G+     G  E A+       F L++ D+ M  M G  
Sbjct: 8   RLLVVDDDTTHRGMLQTLLADWGYRTECAGDGETAVTLCRETPFDLILMDLRMGVMSGIG 67

Query: 64  LLGLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALLDLVARHALGSLA 123
            L  +RA  P +P+L+MTA+  VE AVDA+R GA DYL KP + + L  L    AL   A
Sbjct: 68  ALREIRAYNPAIPILIMTAYSNVESAVDAIRSGAYDYLTKPLDFEELR-LTLERALDHAA 126

Query: 124 VEGEGPV-------AIEPASA--------QLLELASRVARSDSTVLISGESGTGKEVLAR 168
           +  E          + +PA          +L+++ + +A S++TVL++GESGTGKE++AR
Sbjct: 127 LRDENAALKTTLASSFDPAGIIGQSQSMHRLMDMMASIAPSEATVLVTGESGTGKELIAR 186

Query: 169 YIHQQSRRAGEPFIAINCAAIPDNMLEATLFGHEKGSFTGAIAAQAGKFEQADGGTILLD 228
            IH  S+R   P++ +NCAA+ + +LE+ LFGHEKG+FTGA   + G+F+ AD GTI LD
Sbjct: 187 AIHANSQRRHGPYVTVNCAALTETLLESELFGHEKGAFTGAEKRREGRFQSADKGTIFLD 246

Query: 229 EISEMPLGLQAKLLRVLQEREVERVGARKPISLDIRVVATTNRDLAGEVAAGRFREDLYY 288
           EI E  L +QAKLLR +QERE++RVG+ + + +D+R++A TNRDL  EV AGRFR+DLYY
Sbjct: 247 EIGETSLPMQAKLLRAIQEREIQRVGSDQTLRVDVRIIAATNRDLRAEVEAGRFRQDLYY 306

Query: 289 RLSVFPLAWRPLRERTADILPLAERLLNKHVNKMKHAAARLSAEARACLVAYPWPGNVRE 348
           RL+V  L   PLRER  DI  LA   L +   K        + +A   L+ + WPGNVRE
Sbjct: 307 RLNVVTLHVPPLRERVEDIPLLAGHFLRRFTEKNGKRVKGFTPQAMDRLLKHDWPGNVRE 366

Query: 349 LDNAIQRALILQQGGLIQPEDFCLA-----GPVACAPLPALAPAPTATPVPPMDVEGDSV 403
           L+NA +RA++L  G  I   +   A     G   CA             VP  +      
Sbjct: 367 LENAAERAVVLLVGEYISERELPHAIAGGDGDATCA-------------VPRFN------ 407

Query: 404 GALGDDLRRREFQMIIDTLRAERGRRKEAAERLGISPRTLRYKLAQMRD 452
              G  L   E   I+D + A  G + EAA RLGI+ +TL  KL +  D
Sbjct: 408 ---GMTLEEIERAAILDAMDASEGNKSEAARRLGITRKTLHAKLNRYAD 453