Pairwise Alignments

Query, 464 a.a., Fis family transcriptional regulator from Pseudomonas fluorescens FW300-N2C3

Subject, 467 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  310 bits (794), Expect = 7e-89
 Identities = 178/458 (38%), Positives = 268/458 (58%), Gaps = 28/458 (6%)

Query: 4   KVLLVEDDRALREALADTLVLAGHDYAAVGSAEEALQAVGREAFSLVVSDVNMPGMDGHQ 63
           ++L+VED+  +R A+   L+ AG++ A   S EEA Q    + F L++SD+ +PG  G +
Sbjct: 3   RILIVEDEDIIRSAVRKLLLHAGYEVADAASVEEAEQNHEPDQFDLIISDLRLPGAAGTE 62

Query: 64  LLGLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALL----DLVARHAL 119
           L+     R P  PVL+MT++ ++  AVD+M+ GA +Y+ KPF+   +L    +++AR   
Sbjct: 63  LIN----RAPNTPVLIMTSYASLRSAVDSMKMGAVEYIAKPFDHDEMLAAVENILARKPA 118

Query: 120 GSLAVEGEGPVAIEPASA--------------QLLELASRVARSDSTVLISGESGTGKEV 165
           G  + +   P    P S+              ++  L  +VA +++TVLI GESGTGKE+
Sbjct: 119 GRNSGDDSAPALETPESSDPANIMFGQCEPMQRVFTLIRKVAPTETTVLIQGESGTGKEL 178

Query: 166 LARYIHQQSRRAGEPFIAINCAAIPDNMLEATLFGHEKGSFTGAIAAQAGKFEQADGGTI 225
            AR +H  S RA +P I++NCAAIP++++E+ LFGHEKG+FTGA++A+ G  E ADGG++
Sbjct: 179 AARALHLLSPRAAKPLISVNCAAIPESLIESELFGHEKGAFTGAVSARTGLIEAADGGSL 238

Query: 226 LLDEISEMPLGLQAKLLRVLQEREVERVGARKPISLDIRVVATTNRDLAGEVAAGRFRED 285
            LDEI E+P   QA+LLRVLQE E+ +VG+ +  ++++R++A T+R+L      G FRED
Sbjct: 239 FLDEIGELPAEAQARLLRVLQESEIRKVGSTQSRTVNVRMIAATHRNLKAMTRTGEFRED 298

Query: 286 LYYRLSVFPLAWRPLRERTADILPLAERLLNKHVNKMKHAAARLSAEARACLVAYPWPGN 345
           LYYRL+V  +   PLRER +DIL LA R L +   +M      LS EA   L  + WPGN
Sbjct: 299 LYYRLNVMQIRIPPLRERQSDILGLARRFLKRQGERMGKPDLNLSPEAMRALERHRWPGN 358

Query: 346 VRELDNAIQRALILQQGGLIQPEDFCLAGPVACAPLPALAPAPTATPVPPMDVEGDSVGA 405
           VREL+NAI+RA IL  G +I P    L    +   +P              +V+      
Sbjct: 359 VRELENAIERATILCDGDVITPSLLDLDSEGSDEYIPETLVDGNNEQTHTREVDA----- 413

Query: 406 LGDDLRRREFQMIIDTLRAERGRRKEAAERLGISPRTL 443
             +DL   ++         +R    E A++LGIS ++L
Sbjct: 414 -SNDLSLEDYFQHFVLENQDRMSETELAQKLGISRKSL 450