Pairwise Alignments

Query, 464 a.a., Fis family transcriptional regulator from Pseudomonas fluorescens FW300-N2C3

Subject, 446 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  447 bits (1149), Expect = e-130
 Identities = 253/457 (55%), Positives = 312/457 (68%), Gaps = 20/457 (4%)

Query: 4   KVLLVEDDRALREALADTLVLAGHDYAAVGSAEEALQAVGREAFSLVVSDVNMPGMDGHQ 63
           K+LLVEDD +LREAL DTL+LA +D   V S EEA+  + +  F LV+SDV M G+ G  
Sbjct: 5   KLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAIIVLKQHQFDLVISDVQMQGIGGLG 64

Query: 64  LLGLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALLDLVARHALGSLA 123
           LL  L+   P+LPVLLMTA+  +  AV A++ GA DYL KPF P+ LL+ V+R+    L 
Sbjct: 65  LLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLNQVSRYL--PLK 122

Query: 124 VEGEGPVAIEPASAQLLELASRVARSDSTVLISGESGTGKEVLARYIHQQSRRAGEPFIA 183
              + PV  +  S  LL LA RVA SD++V+I G SG+GKEVLARYIHQ S RA E F+A
Sbjct: 123 QNSDQPVVADEKSLALLSLAQRVAASDASVMILGPSGSGKEVLARYIHQHSSRADEAFVA 182

Query: 184 INCAAIPDNMLEATLFGHEKGSFTGAIAAQAGKFEQADGGTILLDEISEMPLGLQAKLLR 243
           INCAAIP+NMLEATLFG+EKG+FTGA  A  GKFEQA GGT+LLDEISEM LGLQAKLLR
Sbjct: 183 INCAAIPENMLEATLFGYEKGAFTGAYQACPGKFEQAQGGTLLLDEISEMDLGLQAKLLR 242

Query: 244 VLQEREVERVGARKPISLDIRVVATTNRDLAGEVAAGRFREDLYYRLSVFPLAWRPLRER 303
           VLQEREVER+G RK I LD+RV+AT+NRDL   VAAG+FREDLYYR++VFPL W  L +R
Sbjct: 243 VLQEREVERLGGRKTIKLDVRVLATSNRDLKAVVAAGQFREDLYYRINVFPLTWPALNQR 302

Query: 304 TADILPLAERLLNKHVNKMKHAAARLSAEARAC--LVAYPWPGNVRELDNAIQRALILQQ 361
            ADILPLA  LL KH   +         EA AC  L+ + WPGNVRELDN +QRALIL+ 
Sbjct: 303 PADILPLARHLLTKHAKALSIIDVPEFDEA-ACRRLLGHRWPGNVRELDNVVQRALILRS 361

Query: 362 GGLIQPEDFCLAGPVACAPLPALAPAPTATPVPPMDVEGDS-VGALGDDLRRREFQMIID 420
           G +I   D  +                   P+   D E  S    LG++L+ +E  +I++
Sbjct: 362 GTVITANDIIIDA--------------QDVPLSSDDAEYCSEPEGLGEELKAQEHVIILE 407

Query: 421 TLRAERGRRKEAAERLGISPRTLRYKLAQMRDAGMDV 457
           TL   +G RK  AE+LGIS RTLRYK+A+MRD G+ +
Sbjct: 408 TLAQCQGSRKLVAEKLGISARTLRYKMARMRDMGIQL 444