Pairwise Alignments

Query, 294 a.a., flagellar motor protein MotD from Pseudomonas fluorescens FW300-N2C3

Subject, 275 a.a., chemotaxis motB protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  112 bits (280), Expect = 9e-30
 Identities = 80/256 (31%), Positives = 127/256 (49%), Gaps = 26/256 (10%)

Query: 12  NHERWLVSYADFITLLFAFFVVMYSISSVNEGKYKVISEALIG-------VFTDSDRALK 64
           NHERWL+SYADF+TLLFA FVV+YS +  ++ + K + E LI        + T +  AL 
Sbjct: 11  NHERWLISYADFMTLLFALFVVLYSFAMSDKNEAKFMVEGLIDSLSKIGLISTPAVNALA 70

Query: 65  PIPIGEERPKTTTPA-------------KPLVKDSEQVDAGIAGSSDPLKSIADDISAAF 111
           P       P T T A              P   +S   D   A S+D ++   + ISA  
Sbjct: 71  PGGTSILEPNTVTSAVDAEPKLIETATTAPSTSESNN-DLTNAKSNDTIRKYKEIISAKL 129

Query: 112 GDLISSNQMTVR--GNELWVEIELNSSLLFGSGDAMPSDMAFNIIDKVAAILKPFDNPIH 169
            + I + ++ +    + L + I  N++  F SG A        +IDK+  ++      + 
Sbjct: 130 KNEIENQEVEIDEVSDNLIIRIGDNNT-FFASGSAFIQPKFIPLIDKIGEVIASVPGRVV 188

Query: 170 VEGFTDDQPIRTAQYPTNWELSSARSASIVRMLAM-QGVNPGRLASVGYGEFQPVANNAT 228
           + G T D  +    Y  NW+LSS R+ ++VR++   +GVNP R+   G  + QP   N T
Sbjct: 189 IAGHT-DATLPMEIYADNWDLSSLRATAVVRIMTKNKGVNPSRIIVQGLADTQPRFQNDT 247

Query: 229 AEGRARNRRVVLVVSR 244
            E R +NRR+ +++++
Sbjct: 248 PEHRQKNRRIEIILNQ 263