Pairwise Alignments

Query, 294 a.a., flagellar motor protein MotD from Pseudomonas fluorescens FW300-N2C3

Subject, 257 a.a., chemotaxis protein PomB (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 85.5 bits (210), Expect = 1e-21
 Identities = 66/226 (29%), Positives = 117/226 (51%), Gaps = 15/226 (6%)

Query: 16  WLVSYADFITLLFAFFVVMYSISSVNEGKYKVISEALIGVFTDSDRALKPIPIGEERP-K 74
           W+V++AD ++LL  FF+++ S +  +  K+    +A +G   D+    +  P   E    
Sbjct: 31  WIVTFADMMSLLLCFFILLLSFAKTDIAKF----QAALGSIQDAFGVQRERPQDIEAAFS 86

Query: 75  TTTPAKPLVKDSEQVDAGIAGSSDPLKSIADDISAAFGDLISSNQMTVRGNELWVEIELN 134
            TT ++ L+  +E++DA      +  + + + ++      I+ N + +   E  + + +N
Sbjct: 87  PTTESQVLI--TEKLDAAEQEQLEVARMLKELVNEQAE--IAKNAI-ISAEEGGINLRVN 141

Query: 135 SSLLFGSGDAMPSDMAFNIIDKVAAILKPFDNPIHVEGFTDDQPIRTAQYPTNWELSSAR 194
           S  LF  G A        +I  V  IL      + VEG T  +   ++Q+PT+WELS+AR
Sbjct: 142 SRALFEPGSARLLPDGEAVIRLVHTILLKHKYDLIVEGHTGSREPFSSQFPTHWELSAAR 201

Query: 195 SASIVRMLAMQGVNPGRLASVGYGEFQPVA--NNATAEGRARNRRV 238
           + ++VR +   GV+P RL +VGYG+ +P+   N+ T E    NRRV
Sbjct: 202 AVTLVRHILSLGVSPRRLKAVGYGDTRPLVPENDDTGE---LNRRV 244