Pairwise Alignments

Query, 294 a.a., flagellar motor protein MotD from Pseudomonas fluorescens FW300-N2C3

Subject, 246 a.a., chemotaxis protein MotB (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 87.4 bits (215), Expect = 3e-22
 Identities = 67/244 (27%), Positives = 116/244 (47%), Gaps = 21/244 (8%)

Query: 4   RRHREEHVNHERWLVSYADFITLLFAFFVVMYSISSVNEGKYKVISEALIGVFTDSDRAL 63
           RR   +H+  + W+++Y+D +TLL AFFV++ S+SSV+  +++ ++ +L       D A 
Sbjct: 9   RRKPHQHIPQQGWMLTYSDLVTLLLAFFVLLVSMSSVDRVQFERMASSL---RQPGDLAG 65

Query: 64  KPIPIGEERPKT--TTPAKPLVKDSEQVDAG---IAGSSDPLKSIADDISAAFGDLISSN 118
            P     E P+T  +   + L+ D+E + A    I     P + +   + A         
Sbjct: 66  TP-----EAPRTDVSKRLRDLLMDAEALSANAVEIRSLLFPPQVLPPGVEAR----TVER 116

Query: 119 QMTVRGNELWVEIELNSSLLFGSGDAMPSDMAFNIIDKVAAILKPFDNPIHVEGFTDDQP 178
            + V  N   V I L   LLF  G       +  ++D +  +L   D  ++V   TD   
Sbjct: 117 DVEVLENPEGVVIALTHDLLFPQGQDRLPPASLRLLDTLTDVLAGLDADVNVSAHTD--- 173

Query: 179 IRTAQYPTNWELSSARSASIVRMLAMQGVNPGRLASVGYGEFQPVANNATAEGRARNRRV 238
             T      W+LS  R+ S++     +G++P R +  GYG  +P+  +A+ E   RNRRV
Sbjct: 174 -ATEGGADPWDLSDRRALSVLEHFLQRGMDPARFSVSGYGPDRPLDASASPEAAQRNRRV 232

Query: 239 VLVV 242
            ++V
Sbjct: 233 EILV 236