Pairwise Alignments

Query, 294 a.a., flagellar motor protein MotD from Pseudomonas fluorescens FW300-N2C3

Subject, 243 a.a., chemotaxis MotB protein, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  103 bits (257), Expect = 4e-27
 Identities = 67/228 (29%), Positives = 118/228 (51%), Gaps = 15/228 (6%)

Query: 16  WLVSYADFITLLFAFFVVMYSISSVNEGKYKVISEALIGVFTDSDRALKPIPIGEERPKT 75
           W V+YADF+T + AFF++M+ ++  +    K   E L G F+ SD A       +    +
Sbjct: 10  WKVAYADFVTAMMAFFLLMWILNMTS----KETKEGLAGYFS-SDAAKM-----QSNNVS 59

Query: 76  TTPAKPLVKDSEQVDAGIAGSSDPLKS---IADDI-SAAFGDLISSNQMTVRGNELWVEI 131
                P V+ ++++D      ++  +S   IA  +      D    +   +  +++ V++
Sbjct: 60  PVANNPFVQSTDKLDTRDFKITEVERSHYAIAQKLRQMLMADATPQSASGISADDVGVQL 119

Query: 132 ELNSSLLFGSGDAMPSDMAFNIIDKVAAILKPFDNPIHVEGFTDDQPIRTAQYPTNWELS 191
            +NS +++  G A  +     ++D V  ILK ++  + V G TD    R + YP+NWELS
Sbjct: 120 RVNSDIMYAPGSAELAPEGAKVLDDVIRILKEYNLYLVVRGHTDSGEPRNSIYPSNWELS 179

Query: 192 SARSASIVRMLAMQG-VNPGRLASVGYGEFQPVANNATAEGRARNRRV 238
            AR+A+ VR +   G + P RL S+ Y + +P+  N + + RA+NRRV
Sbjct: 180 GARAAAAVRYIITHGEIKPTRLRSIAYADTRPLEPNTSPDSRAKNRRV 227