Pairwise Alignments

Query, 294 a.a., flagellar motor protein MotD from Pseudomonas fluorescens FW300-N2C3

Subject, 244 a.a., motB protein, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 91.7 bits (226), Expect = 2e-23
 Identities = 67/250 (26%), Positives = 119/250 (47%), Gaps = 31/250 (12%)

Query: 8   EEHVNHERWLVSYADFITLLFAFFVVMYSISSVNEGKYKVISEALIGVFTDSDRALKPIP 67
           EE      W+ + +D   LL AFF++++S+SS+++ ++    E +  VF   +  L    
Sbjct: 13  EEDEPPNEWMTTLSDISMLLLAFFILLFSLSSIDKKRFAESFETVRMVFGGKESELTTSN 72

Query: 68  IGEERP---KTTTPAKPLVKDSEQVDAGIAGSSDPLKS--IADDISAAFGDLISSNQMTV 122
           +  +     +T    + L++   Q       + + +++    + +    G +     +T+
Sbjct: 73  VRTDEGALLETVRLQRELIEAQRQ-------TYNEMRTYFTVNGVEGVIGAVFDEGVITL 125

Query: 123 RGNELWVEIELNSSLLFGSGDAMPSDMAFNIIDKVAAILKPF-----DNPIHVEGFTDD- 176
           R         + S +LF  G    +  A    D+V A LK       +  I+++GFTDD 
Sbjct: 126 R---------VPSEVLFAPGAVELAPGA----DRVLATLKDLFIRRREQNINIKGFTDDV 172

Query: 177 QPIRTAQYPTNWELSSARSASIVRMLAMQGVNPGRLASVGYGEFQPVANNATAEGRARNR 236
           QP   A++  NWE+S+ RS +++R     G+ P RL + G GE  P+  N + E RARNR
Sbjct: 173 QPSANARFKDNWEVSALRSVNVLRYFLGAGIEPARLTATGLGELDPLFPNTSDENRARNR 232

Query: 237 RVVLVVSRNL 246
           RV  V+ R +
Sbjct: 233 RVEFVLERRV 242