Pairwise Alignments

Query, 294 a.a., flagellar motor protein MotD from Pseudomonas fluorescens FW300-N2C3

Subject, 306 a.a., flagellar motor protein MotB (RefSeq) from Shewanella sp. ANA-3

 Score = 83.2 bits (204), Expect = 7e-21
 Identities = 69/282 (24%), Positives = 121/282 (42%), Gaps = 55/282 (19%)

Query: 16  WLVSYADFITLLFAFFVVMYSISSVNEGKYKVISEALIGVFTDSDRA-LKPIPIG----- 69
           WL ++AD ++LL  FFV++ S S ++  K+K I+ ++   F   ++  +K IP G     
Sbjct: 14  WLATFADLMSLLMCFFVLLLSFSEMDVMKFKQIAGSMKYAFGVQNKVEVKDIPKGTSVIA 73

Query: 70  -EERP-------------KTTTPAKPLV------------------------------KD 85
            E RP             +T    +P++                              + 
Sbjct: 74  LEFRPGRPDPTPIEIINQQTNEMTEPVLDYQAGEDDSAGGVQQQNGSQRGGEASATAQET 133

Query: 86  SEQVDAGIAGSSDPLKSIADDISAAFGDLISSNQMTVR--GNELWVEIELNSSLLFGSGD 143
           ++ V A  A + D +      ++    + I+   + +   G ++ + I    S   GSG 
Sbjct: 134 ADAVKAEAAAAQDKINQQVKKMAQELNNEITDGAIEIESLGQQIIIRIREKGSFASGSGF 193

Query: 144 AMPSDMAFNIIDKVAAILKPFDNPIHVEGFTDDQPIRTAQYPTNWELSSARSASIVR-ML 202
             P      ++  V  +LK     I V G+TDD  I    Y +NW+LSS R+ ++   +L
Sbjct: 194 LQPRFKP--VVRSVGELLKDVPGIITVSGYTDDMQISDELYSSNWDLSSKRAVAVADVLL 251

Query: 203 AMQGVNPGRLASVGYGEFQPVANNATAEGRARNRRVVLVVSR 244
            ++G +P R+  VG     P+  N + E RARNRRV + + +
Sbjct: 252 QVKGFDPKRMKVVGMASNNPIVPNDSPENRARNRRVEIAIEQ 293