Pairwise Alignments

Query, 272 a.a., transcriptional regulator from Pseudomonas fluorescens FW300-N2C3

Subject, 270 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  266 bits (681), Expect = 3e-76
 Identities = 134/269 (49%), Positives = 186/269 (69%), Gaps = 2/269 (0%)

Query: 1   MKRSAFFISDGTGITAETLGQSLLAQFENITFAKFIRPYIDSVDKARAMVQQINKAAETD 60
           M R  F+ISDGT ITAE  G ++L+QF  + F     P++++  KA A+  QIN    T 
Sbjct: 1   MSRKVFYISDGTAITAEVFGHAVLSQFP-VEFEALTIPFVETTQKAEAVKAQINDCFITT 59

Query: 61  GFRPIIFDTIVNQDIREILATSNGFMIDIFSTFLAPLEQELSEHSSYSVGKSHSIGHNSN 120
           G RP++F +IV  +IR+I+ +S     D  +TF+APLE +L   +     ++H   ++S 
Sbjct: 60  GERPLVFHSIVKAEIRDIIYSSECIDYDFLNTFVAPLEDQLGVKAVPVTHRTHGKANHS- 118

Query: 121 YMERIEAVNFALDNDDGARTHYYDKADLILVGVSRCGKTPTCLYMAMQFGIRAANYPLTE 180
           Y  RI+A+N+A++NDDG    + DKAD++L+GVSRCGKTP+ LY++MQFGI+AANYP  E
Sbjct: 119 YEARIDAINYAMENDDGQTLKHIDKADIVLLGVSRCGKTPSSLYLSMQFGIKAANYPFIE 178

Query: 181 DDMERLQLPSALRAHQHKLFGLTIDPDRLTAIRNERKPNSRYSSYAQCEFEVREVENLFR 240
           DDM+ L+LP  L+ ++HKLFGLTIDP RL  IR  R  NSRYSS  QC  EV+EVE +++
Sbjct: 179 DDMDNLKLPEVLKKNKHKLFGLTIDPVRLHEIRQSRMENSRYSSLRQCRIEVKEVEMMYK 238

Query: 241 RENIPHINSTHFSVEEISAKILVEKGVER 269
           RE IP +N+T+ SVEEI+ KIL   G+ER
Sbjct: 239 RERIPFVNTTNHSVEEIATKILDVTGLER 267