Pairwise Alignments

Query, 565 a.a., AMP-binding protein from Pseudomonas fluorescens FW300-N2C3

Subject, 549 a.a., long-chain-fatty-acid--CoA ligase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  461 bits (1187), Expect = e-134
 Identities = 232/544 (42%), Positives = 340/544 (62%), Gaps = 3/544 (0%)

Query: 21  LLAQTIGEVFDQTVARYPEGEALVVRHQSLRYTWQQLAEAVDLHARALLALGLKTGDRLG 80
           L  +T+G+  +      P+ E +V   ++LR+TW QL + VD  A+ L+A+G++ G  +G
Sbjct: 3   LFERTLGQWLEHWAEETPDKEYIVYSDRNLRFTWSQLNQRVDDMAKGLIAVGVERGTHVG 62

Query: 81  VWAPNCAQWCISQFASAKLGVILVNINPAYRVSELEYVLKQSGCQWLVCAGAFKTSDYHA 140
           +WA N   W    +A AK+G + V +N  Y+ +ELEY+ + S    L      K SD+  
Sbjct: 63  IWAANVPDWLTLLYACAKIGAVYVTVNTNYKQAELEYLCQNSDMHTLCIVNGEKDSDFVQ 122

Query: 141 MLQTLAPELAEQPIGQMQSERLPELRGVISLDSQPPAGFLPWSQLAALGAAVTPGQLAER 200
           M  T+ PEL     G ++SER P ++ VI +  +   G    +++  LG  V   +L E 
Sbjct: 123 MTYTMLPELKTCERGHLKSERFPYMKNVIYVGQEKHRGMYNTAEILLLGNNVEDDRLTEL 182

Query: 201 QSSLRFDQPVNIQYTSGTTGFPKGATLSHHNILNNGYMVGESLGLTAGDRLVIPVPLYHC 260
           +S +     VN+QYTSGTTGFPKG  L+H+NI NNG++ GE +  TA D+L   VPL+HC
Sbjct: 183 KSKVDCHDVVNMQYTSGTTGFPKGVMLTHYNIANNGFLTGEHMKFTADDKLCCCVPLFHC 242

Query: 261 FGMVMGNLGCMTHGSTMIYPNDAFDPLLTLKAVAEEKATALYGVPTMFIALLDQPQRGDF 320
           FG+V+  + C+THG T +   + FDPL+ L ++ +E+ TALYGVPTMFIA L  P    F
Sbjct: 243 FGVVLATMNCLTHGCTQVMV-ERFDPLVVLASIHKERCTALYGVPTMFIAELHHPMFDLF 301

Query: 321 DLSSLRTGIMAGATCPIEVMRRVINEMHMAEVQIAYGMTETSPVSLQTGPSDELELRVTT 380
           D+S LRTGIMAG+ CP+E+M++V  +M+M +V   YG+TE +P    T   D  ++R  T
Sbjct: 302 DMSCLRTGIMAGSLCPVELMKQVEEKMYM-KVTSVYGLTEAAPGMTATRIDDSFDVRCNT 360

Query: 381 VGRTQPQLESKIID-EAGNLVSRGAVGELCTRGYSVMLGYWNNPKGTSDAIDPEGWMHTG 439
           VGR     E ++ID E G     G  GE+C RGY+ M GY+ NP+ T++ ID + ++H+G
Sbjct: 361 VGRDFEFTEVRVIDPETGEECPVGVQGEMCNRGYNTMKGYYKNPEATAEVIDKDNFLHSG 420

Query: 440 DLATMDEQGYVCIVGRNKDMIIRGGENIYPRELEEFFFTHPAVADVQVIGIPCSRYGEEI 499
           DL   DE G   I GR KDMIIRGGENIYPRE+EEF +    V DVQV GIP  +YGE +
Sbjct: 421 DLGIKDEDGNYRITGRIKDMIIRGGENIYPREIEEFLYKLDGVKDVQVAGIPSKKYGEAV 480

Query: 500 VAWIKFHPGHSASEQELQAWCKERIAHFKTPRHFKFVEEFPMTVTGKIQKFRMREISIEE 559
            A+I    G    E +++ +CK +I+ +K P++  FV+EFPMT +GKIQKFR++++ ++ 
Sbjct: 481 GAFIILQEGVEMHESDVRDFCKNKISRYKIPKYVFFVKEFPMTGSGKIQKFRLKDLGLQL 540

Query: 560 LRDK 563
            +++
Sbjct: 541 CKEQ 544