Pairwise Alignments

Query, 236 a.a., amino acid ABC transporter permease from Pseudomonas fluorescens FW300-N2E3

Subject, 276 a.a., L-lysine ABC transporter, permease component 2 (from data) from Sinorhizobium meliloti 1021

 Score =  140 bits (353), Expect = 3e-38
 Identities = 91/212 (42%), Positives = 122/212 (57%), Gaps = 13/212 (6%)

Query: 9   WKPFLFSD-GYNF-TGLAMTLWLLVVSIVLGFCLSLPLAIMRTSRWGLLRWPVQLFTYVF 66
           W P  FS  G +F +GL +TL L++ SI++G  LSLP+A+ R S+  L  W    + Y F
Sbjct: 50  WDPEKFSRYGPSFLSGLGVTLTLVISSILMGAVLSLPVALGRMSKNRLWGWLAYAYVYFF 109

Query: 67  RGTPLYIQLLICYSGIYGIAVVRSQPLLEA-----FFRDAMNCTLLAFTLNTCAYTVEIF 121
           RGTPL  QL + Y   YG+   R  P LE      FFRDA NC L  FTLNT AY  EI 
Sbjct: 110 RGTPLITQLFLIY---YGLGSFR--PQLETVGLWWFFRDAWNCALFTFTLNTAAYQAEIL 164

Query: 122 AGAIRSIPYGEIEAAHAYGLSGWRLYVKLILPSALRRALPYYSNEVILMLHATSVAFTAT 181
            GAI S+P G+ E A A GL     + K+ILP A+  AL  Y NE+ILM+  +++    T
Sbjct: 165 RGAIESVPRGQREGAAALGLPERVAFFKVILPQAMIVALRPYGNEIILMIKGSAIVAIVT 224

Query: 182 IPDILKVARDANAATFMTFQAFGIAGLLYLAL 213
           + D++   R A + TF  +Q +  A +LYL +
Sbjct: 225 VFDLMGETRRAFSRTF-DYQMYIWAAILYLLM 255