Pairwise Alignments

Query, 236 a.a., amino acid ABC transporter permease from Pseudomonas fluorescens FW300-N2E3

Subject, 239 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) from Rhodospirillum rubrum S1H

 Score =  153 bits (386), Expect = 3e-42
 Identities = 86/216 (39%), Positives = 130/216 (60%), Gaps = 1/216 (0%)

Query: 20  FTGLAMTLWLLVVSIVLGFCLSLPLAIMRTSRWGLLRWPVQLFTYVFRGTPLYIQLLICY 79
           F GL +TL L+ +++ +G  +++P A++R     L+R     F + FRGTPL IQ+ + Y
Sbjct: 15  FEGLPVTLKLVTLAVAIGVFIAIPTALLRVHPSPLVRAFPYAFIFFFRGTPLLIQIALVY 74

Query: 80  SGIYGIAVVRSQPLLEAFFRDAMNCTLLAFTLNTCAYTVEIFAGAIRSIPYGEIEAAHAY 139
            G+  +  +R   +L    R+   C L+AF LNT AY+ EI  GAI++IP GE+EAA AY
Sbjct: 75  YGLSTLPWIRENEVLWPILREPFWCALIAFALNTGAYSAEILRGAIQAIPRGEVEAARAY 134

Query: 140 GLSGWRLYVKLILPSALRRALPYYSNEVILMLHATSVAFTATIPDILKVARDANAATFMT 199
           G+ G  +  ++ILP A +  LP Y NE+IL+L  +++A + T+ DI  VAR   A  +  
Sbjct: 135 GMRGLLIVRRIILPRAFQIGLPAYGNEIILILKGSALASSITLLDITGVARLLYARYYTP 194

Query: 200 FQAFGIAGLLYLALSFGLVGAFRLAEKRW-LNFLGP 234
            +AF  AG++YL L + L    RL E+R   + LGP
Sbjct: 195 VEAFVTAGVIYLILVYLLTRGLRLIERRLSRHLLGP 230