Pairwise Alignments

Query, 1213 a.a., chromosome segregation protein SMC from Pseudomonas fluorescens FW300-N2E3

Subject, 1018 a.a., SMC domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  226 bits (577), Expect = 6e-63
 Identities = 322/1223 (26%), Positives = 509/1223 (41%), Gaps = 256/1223 (20%)

Query: 16   GPFE----IDFTAEPLASSGLFAITGPTGAGKSTLLDALCLALFGAVPRLNNTGRDAKVP 71
            GPF     IDF A  L S+ LF I GPTGAGK+T+LDA+C AL+G        G   +  
Sbjct: 12   GPFADEQIIDFAA--LGSNPLFLINGPTGAGKTTILDAICFALYGKTTGDEREGTQMRCD 69

Query: 72   DADGEIATGDPRTLLRRGTGDGYAEVDF-VGIDGRRYRARWEANRAREKANGK---LQAS 127
             AD +  T                +V F   +   RY  R    + R K +G+   LQ S
Sbjct: 70   MADEQRLT----------------QVSFEFELGSTRYLIRRVPEQPRAKKSGEGVTLQKS 113

Query: 128  RQSLRDLDTD----QLLASQKGEYKTQLEAVLGLNFEQFTRAVMLAQSEFSAFLKADDND 183
               L  +DTD     L+A++  +   Q+E + GL+ +QF + ++L Q +F   L AD   
Sbjct: 114  EAQLSRVDTDGSETLLVAAKVSDATAQIEQLTGLDVDQFRQVMVLPQGKFRELLMADSKA 173

Query: 184  RSELLEKLTDTALYTRLGKRAFDKSKETREAHKLLQDQATGVTPLEPEARAELDQRFNDA 243
            R ++  +L  T +Y R+ +R   ++   R   + ++++  G+        AEL      +
Sbjct: 174  REKIFSQLFQTHIYRRIEERLKQQAAGIRRDVEAMRNRRGGIL-----EGAEL-----AS 223

Query: 244  QQQLKNQQAQLKQLELQNTWLKELQQLQDQQQAAAEQLQQAQQSWDAQTGERLNLARLEQ 303
             Q L  +QA +           EL+  Q  +Q A + L  A Q+ D     + +  RL+ 
Sbjct: 224  DQALIEEQALI---------APELELAQAHKQQAEQALLTANQNLDKGLKLQSDFNRLQA 274

Query: 304  LAPQRHQF-ARQTELSAQLSPLAALIQQHAQQQNELQTRQVQLEHSLESAKTALTQAQSQ 362
            L  +     ARQ E        A L QQ                           QA  +
Sbjct: 275  LQSEGEGLKARQLE--------ATLWQQR-------------------------LQAAGR 301

Query: 363  HSNNAPLLRQAFEEQSNLARLTQTINASAELKHNAELASSEGQQAIAQM--LEQQQRVAE 420
             ++ +PL R            +Q ++   ++  +AE A ++ QQA  Q+  LEQ+Q   +
Sbjct: 302  ANSLSPLYRAMQSRLGEQRSASQHLDECQQIHASAEQALNQSQQAFEQLGALEQEQLSQQ 361

Query: 421  RLATIATQLELSLQLAPVSDAWNAYRERLQQLMLVGNRLKKGQAELLQMEQRAADTAAQF 480
            +     TQLE    LAP          +L+QL  +  RL  GQA++   E     +A Q 
Sbjct: 362  QR---LTQLE---ALAP----------QLEQLNQLSERLADGQAKMQAAEASGKQSAKQL 405

Query: 481  SAQRQSLELLYS-----EAGAEPAAVAEQIQILGSLLQDNRKQQRAIEELARLWARQQEL 535
                Q+ + + S     +  AEP    +Q       L D R Q +  E       R Q+ 
Sbjct: 406  DELNQARQEIVSRREILKRDAEPQLALQQ------SLSDGRAQLKVFE-------RWQQQ 452

Query: 536  DTRTQDLQQRLQTVQTERERLTREGVQAKAELTVAEQTLTVTRELLERQRLARSASVEEL 595
                  L+Q+L   +T    L  +  QA      A + L ++    +  RLA        
Sbjct: 453  GLEIAALEQKLTAAKTAGSELAEKHKQA----IDAHKRLELSWHRGQAARLA-------- 500

Query: 596  RGQLQDDQPCPVCGSVEHPYHQPEALLQSLGRHD-ESEQANAQKAVDLLKEKLADLRTEV 654
              +L   +PCPVCGS+EHP  +P     ++G  D  S++A AQ      K++ +D     
Sbjct: 501  -AELSPGEPCPVCGSLEHP--EP-----AMGEFDLPSDEALAQ-----AKQRESD----- 542

Query: 655  GGLIAQQKELLQQQEQLATQQQSLTPSLEAHPLAAQLLTQETAKRDAWLNQQSAQLNQSI 714
                     L Q + +    QQSL+                           + QL+ S+
Sbjct: 543  -----ALNLLHQARSEYKLLQQSLS---------------------------NLQLSASL 570

Query: 715  AQDEQRQSALLTLQQDAARLQQQLQAAD--QASQQAAQQLAIQQRELSNDSQRLEEELAA 772
             Q+E  ++A L+  +  ARL +     +  +A+QQ+  QL  Q     +  + L+     
Sbjct: 571  LQEELGEAAGLSFDEHQARLAELSDGFERAKAAQQSLAQLETQLERSEHQGRELQ----- 625

Query: 773  FSALLPAATLDGLRNEPAATFMQLDQQVAQRLEQLELQREELSEQQQRQQTLEKEQDRQL 832
             +AL  A    G   E  A+     QQ++  + Q      +++        L K  D   
Sbjct: 626  -TALDEARAHYGKLAEQLASDKGQYQQISAAIPQ---GFSDVATLSTAIADLTKTIDELK 681

Query: 833  TRVQQLQAAQLQFSALAEQQHAAQQKLAEL----LGE-QPSAEQWQQQLDQAVEQARQAE 887
             R Q ++AA     A AEQ +AA +   E     LGE    AEQ      QA+  +    
Sbjct: 682  ARQQSVRAAH----AKAEQDNAAAKASLEAASRRLGEVNALAEQESLSFQQALATSEFES 737

Query: 888  AMANQELQEVRSQQIQLAAELRAEQQRQHALEAESHELSGKIAEWRALHPELDDGGLEQL 947
              A ++     ++Q +L+ +++A +Q     +A   +L   +A   A     D   LEQ 
Sbjct: 738  VAAFEQACLTEAEQAELSNQIKAFEQALITHQANLSQLQEALAGCEA----PDMSALEQ- 792

Query: 948  LAFSDEQVSQLRQQLQLGEKAIEQAKVLVHEREQRLHIHQAQHNGNLDAEQLATALGELQ 1007
                 EQV Q  Q L   +K   +A  L   +EQ               + L    G L+
Sbjct: 793  QKMDAEQVMQ--QALAQWQKVSARAAQLSQTQEQ--------------LKALDLKAGALE 836

Query: 1008 NQFGISEQLCAELRAQQAEDQRRQDANQALAQRIGDAYNEWQRWARLNALIGSATGDTFR 1067
             Q+ +   L        A+       N+   QR             L+ L+         
Sbjct: 837  QQYAVVGTL--------ADVANGNTGNKISLQRF-----------VLSVLLDDVL----- 872

Query: 1068 KIAQAYNLDLLVHHANAQLRQLVRRYRLKRGGSMLGL-LVMDTEMGDELRSVHSLSGGET 1126
             +  ++ L L+   +  + R L +  R K G    GL L ++     ++RSV +LSGGE+
Sbjct: 873  -LEASHRLQLM---SKGRYRLLRKEERAK-GNKASGLELEVEDAYTAKVRSVATLSGGES 927

Query: 1127 FLVSLALALGLASMA---SSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVGV 1183
            F+ +L++ALGL+ +    +  +K+++LFIDEGFGSLD +SL+LA+  L  LQ+ GR VGV
Sbjct: 928  FMAALSMALGLSDVVQAYAGGIKLDTLFIDEGFGSLDQDSLELAIRTLMDLQSAGRMVGV 987

Query: 1184 ISHVQEMHERIPVQIQVHRQGNG 1206
            ISHV EM E+I  +I + +   G
Sbjct: 988  ISHVTEMKEQIASRIDILKSAEG 1010