Pairwise Alignments

Query, 1025 a.a., DNA polymerase from Pseudomonas fluorescens FW300-N2E3

Subject, 1116 a.a., DNA polymerase III subunit alpha from Sinorhizobium meliloti 1021

 Score =  837 bits (2162), Expect = 0.0
 Identities = 479/1063 (45%), Positives = 649/1063 (61%), Gaps = 46/1063 (4%)

Query: 3    AGYAELHCLSNFSFQRGASSALELFERAKRQGYQALAITDECTLAGIVRAWQAAKALELP 62
            A + EL   +NFSF  GA+ A E+   AK+ G   L I D  ++AG+VRA   AK    P
Sbjct: 5    AVFCELGARTNFSFLEGAAPAEEMVVFAKKAGLAGLGIADRNSVAGVVRAHAKAKVEGYP 64

Query: 63   LIIGSEMRIENG-PKLVLLVENLEGYQALCRLITHARRRTEKGQYRVLREDFNGPLPGLL 121
               G+ +   +G P ++   +N  G+  LCRL++    R++KG   +   D       LL
Sbjct: 65   FQPGARLVFADGTPDILAYPKNRRGWGHLCRLLSAGNLRSKKGDCTLHLADLLEWQEELL 124

Query: 122  ALWV-------PDAVDALEHGAWLKGIFGERLWLAVELHYGQNDARRLADWQALATRLQI 174
             + +       P++++ L     LK   G RL+L +  HY   D    A   A+A +  I
Sbjct: 125  LIVMQGEGRPEPESLEVLL--GTLKEHAGNRLYLGLAPHYDGFDRHDFAVLAAIARKAGI 182

Query: 175  PVVASGDVHMHARGRRALQDTMTAIRLHVRVADAGQRLHPNGERHLRSLEALREL---YP 231
             ++A+ D   H    R L D +T+IR HV +A AG  L  N ERHL+    +  L   YP
Sbjct: 183  GLLATNDALYHDPHYRPLADVVTSIREHVPIAGAGFLLQKNAERHLKGPREMARLFSDYP 242

Query: 232  ASLLEETLIIARRCTFDLGQLRYQYPRELVPEGQTPTSWLRRLTEQGLSRRWPEGPDSTV 291
             ++   T    R   F L +L +QYP E   +G+TP   LRRL  +G + R+PEG    V
Sbjct: 243  EAIAN-TRKFFRELAFSLDELSHQYPDENA-DGETPAESLRRLVAEGAAERYPEGVPEKV 300

Query: 292  MALIEKELKLIAELGYESYFLTVEDIVSFARSQRILCQGRGSAANSAVCYALGITEIDPS 351
            M  I+ EL+LI +  YE YFLTV  +V FARS  ILCQGRGSAANS+VC+ LGIT++DP 
Sbjct: 301  MRQIDYELELIHDKKYEPYFLTVHKLVKFARSVNILCQGRGSAANSSVCFCLGITDVDPQ 360

Query: 352  RTSMLFERFLSKERNEPPDIDVDFEHERREEVLQYVFQRYGRTRAALTAVVSTYHGAGAI 411
            + ++LF+RFLSK+R+EPPDIDVDFEHERREEV+QY+++ YG+  A LTA V +Y    A 
Sbjct: 361  KFTLLFDRFLSKDRDEPPDIDVDFEHERREEVIQYIYRTYGKEHAGLTAAVISYRSRSAG 420

Query: 412  RDVAKALGLPPDQVNALADCCGHWSDDVPPLERLREGGFDPDSPVLRQVLSLTRQLIGFP 471
            R+VAKA GL  D  +AL      W       E+ +  G D   P+ R+VL+    L+ FP
Sbjct: 421  REVAKAFGLSEDVQSALVSSIWGWGTSPFTEEQAKGAGLDAADPLTRRVLAYASLLMNFP 480

Query: 472  RHLSQHPGGFVISEQPLDSLVPVENAAMAERTIIQWDKDDLDMVGLLKVDILALGMLSAI 531
            RHLSQH GGFVI+   LD +VP+ N AM +R +I+WDKDDLD + +LKVD+LALGML+ +
Sbjct: 481  RHLSQHVGGFVITRDRLDEVVPIMNTAMPDRYMIEWDKDDLDELKILKVDVLALGMLTCL 540

Query: 532  RRCFDLLRDHRGRDLSLANIPSED-PQTYEMISRADTIGVFQIESRAQMSMLPRLKPQNF 590
             + F LL  H G  ++LA I  +     Y+MI RADT+GVFQIESRAQMSMLPRL+P+  
Sbjct: 541  AKGFKLLEAHYGEPITLAEIYQDHRDAVYDMICRADTVGVFQIESRAQMSMLPRLQPREM 600

Query: 591  YDLVIEVAIVRPGPIQGGMVHPYLRRRNKE---EPETYPSVQLEAVLKRTLGVPLFQEQV 647
            YDLVIEVAIVRPGPIQG MVHPYL+RR  +   E   YPS +L+AVL+RTLGVPLFQEQ 
Sbjct: 601  YDLVIEVAIVRPGPIQGNMVHPYLKRREAQRRGEAVVYPSPELKAVLERTLGVPLFQEQA 660

Query: 648  MQIAIVAADYSPGEADQLRRCMAAWKRHGGLEPHQKRLREGMLKNGYSEEFAAQIFEQIK 707
            MQIAI AA +SP EAD+LRR MA +KR G +   ++++ EGM+ N Y  EFA + F QIK
Sbjct: 661  MQIAITAAGFSPSEADRLRRAMATFKRTGTIHTFERKMVEGMVANDYEREFAERCFNQIK 720

Query: 708  GFGSYGFPESHAASFALLTYASCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHHL 767
            GFG YGFPESHAASFA L YAS WLK + P  F  AL+N+ PMGFY+P Q+++DAR H +
Sbjct: 721  GFGEYGFPESHAASFASLVYASAWLKTYYPDIFCAALLNAQPMGFYAPAQLVRDAREHGV 780

Query: 768  QIRPVDVAASDWDCSLE------------------PIDGEQPAIRLGLRMIKGFREDDAR 809
            ++ PVD+  SDWD  LE                   +   + A+RLG R++KG ++ D +
Sbjct: 781  RMLPVDINHSDWDALLEGEGAFDKNAVHPRHASMREVIKTRKAVRLGFRLVKGLKQTDMK 840

Query: 810  RIEAARLQGEFIDIADLGERARLDVRAQEQLADAGALRRLAGDRHRARWEVAGVQKQ--- 866
             + A R +G +  + DL  R+ L     E+LADA A R +  DR  A W V  + +Q   
Sbjct: 841  ALVARRGEG-YRSVHDLWLRSGLSRSVLERLADADAFRSIGLDRRAALWAVKALDEQSAV 899

Query: 867  --LGLFAGLPS---QEEPCVVLPKPTVSEDLQADYSSVGTTLGPHPLALLRDELRARRCR 921
              L LF G  S   Q EP V LP     E +  DY ++  +L  HP++ +R++   R   
Sbjct: 900  ERLPLFEGAGSDDLQIEPKVALPDMPAGEQVIHDYRTLTLSLKAHPVSFMREDFSRRGIL 959

Query: 922  SSRELLEVEHGRNVSVAGLVTGRQRPGTASGVTFVTLEDEFGNINVVVWRDLAERQRKAL 981
             SR+L     GR V+VAGLV  RQRPG+A+GV F+T+EDE G  N++VW    ++ R+ +
Sbjct: 960  RSRDLAATATGRWVTVAGLVLVRQRPGSANGVIFMTIEDETGIANIIVWEKTFQKYRRQV 1019

Query: 982  IGSQLLKIDGRWEKVGEVRHLIAGRLSDLSPLLNGISVHSRDF 1024
            +GS+L+K+ GR +    V H++A  L D++P+L  +   +R F
Sbjct: 1020 MGSRLVKVRGRLQNQSGVIHVVADHLEDITPMLGLLRREARRF 1062