Pairwise Alignments

Query, 1025 a.a., DNA polymerase from Pseudomonas fluorescens FW300-N2E3

Subject, 1127 a.a., DNA polymerase III subunit alpha from Phaeobacter inhibens DSM 17395

 Score =  855 bits (2210), Expect = 0.0
 Identities = 496/1060 (46%), Positives = 652/1060 (61%), Gaps = 56/1060 (5%)

Query: 5    YAELHCLSNFSFQRGASSALELFERAKRQGYQALAITDECTLAGIVRAWQAAKALEL--- 61
            YAEL   +NF+F  GAS   EL  RA   G  ALAITD  +LAG+VRAW A K L+    
Sbjct: 28   YAELCVTTNFTFLTGASHPEELIVRAAELGLSALAITDHNSLAGVVRAWSALKELKRDPQ 87

Query: 62   -PLIIGSEMRIENG-------------------PKLV----LLVENL-----------EG 86
              L I S+ ++++                    PKL+    L+++N              
Sbjct: 88   DALKIRSQHQVDSSSRQEIGHTSALPKPTTPIFPKLIVGCRLILQNCAVDWIALPCDRSA 147

Query: 87   YQALCRLITHARRRTEKGQYRVLREDFNGPLPGLLALWVPDAV--DALEHGAWLKGIFGE 144
            Y+ L RL+T  +RR EKGQ  +  ED      G++ + +P     +A+     +   F  
Sbjct: 148  YKRLARLLTLGKRRAEKGQCLLYAEDMIDACKGMILIALPKETLSNAVSDIQKIGRQFPN 207

Query: 145  RLWLAVELHYGQNDARRLADWQALATRLQIPVVASGDVHMHARGRRALQDTMTAIRLHVR 204
             ++L     Y  +D   LA    LA     P+VA GDV MH   RR L D +T +R ++ 
Sbjct: 208  HVFLGATPRYDGSDQAYLAACAKLAQTTCAPMVAVGDVLMHRANRRQLADVLTCMRENIN 267

Query: 205  VADAGQRLHPNGERHLRSLEALRELY---PASLLEETLIIARRCTFDLGQLRYQYPRELV 261
            + D G R  PN ER L++   +  ++   PA+ L  T  IA RC FDL +L Y+YP E  
Sbjct: 268  IDDIGTRALPNAERRLKAGADMARIFRDHPAA-LRRTAEIANRCNFDLSELSYEYPHE-E 325

Query: 262  PEGQTPTSWLRRLTEQGLSRRWPEGPDSTVMALIEKELKLIAELGYESYFLTVEDIVSFA 321
             EG+TP   L RL  +GL RR+P+GP    + L+EKEL  + +L + +YFLTV DIV FA
Sbjct: 326  AEGETPQDRLERLAREGLKRRYPDGPPDRAIKLMEKELSAVKDLEFPAYFLTVHDIVQFA 385

Query: 322  RSQRILCQGRGSAANSAVCYALGITEIDPSRTSMLFERFLSKERNEPPDIDVDFEHERRE 381
            RS+ ILCQGRGSAANS +CY LGIT++ P   +M+FERF+SK R EPPDIDVDFEHERRE
Sbjct: 386  RSKGILCQGRGSAANSILCYLLGITDVSPDMIAMVFERFVSKHRGEPPDIDVDFEHERRE 445

Query: 382  EVLQYVFQRYGRTRAALTAVVSTYHGAGAIRDVAKALGLPPDQVNALADCCGHWSDDVPP 441
            EV+Q+++Q+YGR RA L A V  +    AIR+V K +GL  D    L+      S+    
Sbjct: 446  EVIQWIYQKYGRHRAGLCATVIHFRTRAAIREVGKVMGLSQDVTAGLSGQIWGMSNGSVD 505

Query: 442  LERLREGGFDPDSPVLRQVLSLTRQLIGFPRHLSQHPGGFVISEQPLDSLVPVENAAMAE 501
            LER+RE G + +   L Q + L  ++IGFPRHLSQH GGFVI+   LD L P+ENAAM  
Sbjct: 506  LERIRELGLNLEDRRLMQTIRLIGEIIGFPRHLSQHVGGFVITSGRLDELAPIENAAMEN 565

Query: 502  RTIIQWDKDDLDMVGLLKVDILALGMLSAIRRCFDLLRDHRGRDLSLANIPSEDPQTYEM 561
            RT+I WDKDD+D + +LKVDILALGML+ IR+ F L++ H     S+A IP +D  TY+M
Sbjct: 566  RTVICWDKDDIDALRILKVDILALGMLTCIRKAFALMQQHENITHSIATIPQKDEATYDM 625

Query: 562  ISRADTIGVFQIESRAQMSMLPRLKPQNFYDLVIEVAIVRPGPIQGGMVHPYLRRRN-KE 620
            +  AD +GVFQ+ESRAQM+ LPR++P+ FYDLVIEVAIVRPGPIQG MV PY+RRRN  E
Sbjct: 626  LCAADAVGVFQVESRAQMNFLPRMRPREFYDLVIEVAIVRPGPIQGDMVRPYIRRRNGLE 685

Query: 621  EPETYPSVQLEAVLKRTLGVPLFQEQVMQIAIVAADYSPGEADQLRRCMAAWKRHGGLEP 680
            +P+ +   QLE V +RT GVPLFQEQ +QIA+V A +S  EAD LRR +A+++R G +  
Sbjct: 686  KPDPF-GPQLEQVTRRTKGVPLFQEQALQIAVVGAGFSAEEADHLRRSLASFRRMGTISK 744

Query: 681  HQKRLREGMLKNGYSEEFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAF 740
            ++ +   GMLKN YS E A + F QI+GF  YGFPESHAA+FA+L Y S WLKCH PA F
Sbjct: 745  YRDKFIAGMLKNKYSREIAERCFGQIEGFADYGFPESHAAAFAMLAYVSAWLKCHHPAIF 804

Query: 741  ACALINSWPMGFYSPDQILQDARRHHLQIRPVDVAASDWDCSLEPIDGEQPAIRLGLRMI 800
            ACAL+NS PMGFY+P QI++D R H +++RP+ V  S WD SLE       A+RLG R I
Sbjct: 805  ACALLNSQPMGFYAPAQIVRDVRDHGIEVRPICVNQSQWDNSLERRPDGTLALRLGFRQI 864

Query: 801  KGFREDDARRIEAARLQGEFIDIADLGERARLDVRAQEQLADAGALRRLAGDRHRARWEV 860
            KGF+EDD   I AAR  G +ID   L  RA L   A E+LA+A A   +   R  A W+V
Sbjct: 865  KGFKEDDTGWIIAARGNG-YIDPEHLWLRAGLAPAALERLAEADAFSSMGISRRDALWQV 923

Query: 861  AGV--QKQLGLFAGLPSQE---EPCVVLPKPTVSEDLQADYSSVGTTLGPHPLALLRDEL 915
              +     L LF      E   EP V+LP+  + E++  DY S+  +L  HP+ LLR  L
Sbjct: 924  KSITTPAPLPLFNDQLDGEAINEPNVMLPRMHLGEEVVEDYVSMRLSLRAHPMELLRPTL 983

Query: 916  RARRCRSSRELLEVEHGRNVSVAGLVTGRQRPGTASGVTFVTLEDEFGNINVVVWRDLAE 975
                C    +L++    R VSV GLV  RQRPGTASGV F+TLEDE G  NVVVW+ + E
Sbjct: 984  PGLTCND--QLIKAPLQR-VSVGGLVITRQRPGTASGVIFLTLEDETGVCNVVVWKKIYE 1040

Query: 976  RQRKALIGSQLLKIDGRWEKVGEVRHLIAGRLSDLSPLLN 1015
            R R+ ++G +LL + G  ++ G + H+IA  + D S  L+
Sbjct: 1041 RFRRIVMGGRLLCVTGYLQREGTIVHVIAQHIEDESARLS 1080