Pairwise Alignments

Query, 1096 a.a., histidine kinase from Pseudomonas fluorescens FW300-N2E3

Subject, 950 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  386 bits (991), Expect = e-111
 Identities = 231/625 (36%), Positives = 362/625 (57%), Gaps = 30/625 (4%)

Query: 491  AIIVHHKDGQPLTCVISSRQISV-GNEPCIVTTLRDI-------------TQQQRSEAAL 536
            A ++ H  G+     +  R +   G+E CI    R I             T++  S+   
Sbjct: 337  ATLIAHLKGESEQFAVEYRAVRADGSEICIEDRGRVIQRDASGRALRMIGTRRDISDVRR 396

Query: 537  KASEEKFAKA-FHSSPDAITITERDSGRYLEVNDGFCRLTGYSADEVVGKTVYQI-GIWA 594
            +A +++ A   F ++ + + I +  + R L VND  C L+GY  +E++G+++ +I G   
Sbjct: 397  QAEQQRLAATVFEAASEGMVIMDA-TYRVLAVNDACCALSGYEREELLGRSIARIAGTPE 455

Query: 595  EEKQRSTLLAALKAKGRVHHQ-EMLGRNKRGEILTVEVSIEPITLNETACLLMTA--RDV 651
             ++Q   +  AL+  G  H Q E++ + K GE+    V +  +  ++ +   + A   D+
Sbjct: 456  SQRQYEAMRDALERHG--HWQGELIEKRKSGEVYPQWVQLREVRDSDDSVTHVVAFISDL 513

Query: 652  SLLKNAEAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHIN 711
            S+ +  E ++R+L ++D LT L NR L  +RL +    ++R+    A+L++DLD FK +N
Sbjct: 514  SVRRKIEERLRYLTHYDDLTGLANRGLFKERLHEACQRVRRNGRNMAVLYIDLDRFKLLN 573

Query: 712  DSLGHPVGDTVLKIITARLEASVRMEDTVARLGGDEFVVLLSGLEGTRNEVSEQVRELAD 771
            +SLGH   D +L+ ++ RL  ++   DT+ARL GDEFVVLL       +     +  L  
Sbjct: 574  ESLGHEAADALLREVSRRLSTTLAEADTIARLSGDEFVVLLDAYGSLSS-----LAHLGS 628

Query: 772  TLRELLSEPMFLDGQRLQVTPSIGVALIPDHGSTPTDLLKRADIALYRAKDSGRNATQMF 831
             L + + +PM +D Q L ++ SIGV+L+PD+      LL++A+IA+ +AK  G N  Q F
Sbjct: 629  RLLQRIRKPMVIDEQELVISASIGVSLLPDNSRDAEALLRQANIAMQQAKHLGGNTLQFF 688

Query: 832  HNTMQKAASERLRMETDLRLALSRGEFSVQYQPQVDALDGRIIGAEALVRWRHPRLGEQS 891
             +  Q ++   L++E  LR AL  G+  V YQP++   D  +  AEALVRWRHP LG  +
Sbjct: 689  TDRPQASSMHYLQLENQLRKALEVGQLEVFYQPRLSLADDSLEAAEALVRWRHPELGLVA 748

Query: 892  PSEFIKVLEDSGLILEVGAWILDETCQAFRQLIDRGLIDPLNFSLCVNISPRQFRQNDFV 951
            P++FI + E++GLI+ +G ++L E C+  RQ    GL       + VN+S +Q RQ +FV
Sbjct: 749  PAQFIPLAEETGLIIPLGEFVLREACRQARQWQQDGLAA---IRVSVNLSVKQLRQGNFV 805

Query: 952  ERIEQTLSSHGLPYSLLKLEVTEGIVIQNLDDTISKMRRLKKLGVSFAMDDFGTGYSSLT 1011
              + Q L   GLP ++L+LE+TE  ++ ++D+ IS   +L+ LGV  A+DDFGTG+SSL+
Sbjct: 806  SLVRQVLEETGLPATMLELELTESQLLDDIDNAISISEQLRALGVKLAIDDFGTGFSSLS 865

Query: 1012 YLKRLPVDTLKIDQSFIRDATSDPNDAEIIRAIVAMARSLELTVIAEGVETTEQLDFLQG 1071
            YLKR PVD +KID+SFI +      DA I RAI+AM  SLE  V+AEGVET  Q+DFL+ 
Sbjct: 866  YLKRFPVDYVKIDRSFISELEHSSQDAAITRAIIAMVHSLERKVVAEGVETQAQMDFLKA 925

Query: 1072 LGCHLYQGYLHSQPLPLEGFLKLLK 1096
              C   QGYL S P+P   F +LL+
Sbjct: 926  NHCDEIQGYLLSPPVPALQFAELLR 950



 Score = 72.0 bits (175), Expect = 2e-16
 Identities = 61/269 (22%), Positives = 121/269 (44%), Gaps = 9/269 (3%)

Query: 272 TSERKLAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGSARAAQLHGLDPIPFHEPF 331
           T+E   A + L +S+ RL+LALD++ LG WDW +    ++ S R   + G+     H   
Sbjct: 262 TAELARAAEELGESEARLNLALDASGLGLWDWDLQHNRVHHS-RLEVVFGVGLEKRHAED 320

Query: 332 DAFFEGVPDDERDSMRDAYRSLREGPAGNYQLTYRVQLPDGSSRYLESRAR-LYRDESGV 390
            +    +   +   +     +  +G +  + + YR    DGS   +E R R + RD SG 
Sbjct: 321 GSLLPDIHPQDLPIVHATLIAHLKGESEQFAVEYRAVRADGSEICIEDRGRVIQRDASGR 380

Query: 391 PLRMAGTLLDITDQVEREQRLITSEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQIF 450
            LRM GT  DI+D     +R    +   A++F+ + + + V    T + + +N A   + 
Sbjct: 381 ALRMIGTRRDISD----VRRQAEQQRLAATVFEAASEGM-VIMDATYRVLAVNDACCALS 435

Query: 451 GWTTTDVIDRSADEIGLWDASVKRQQRIEQVIREQALNNVAIIVHHKDGQPLTCVISSRQ 510
           G+   +++ RS   I     S ++ + +   +         +I   K G+     +  R+
Sbjct: 436 GYEREELLGRSIARIAGTPESQRQYEAMRDALERHGHWQGELIEKRKSGEVYPQWVQLRE 495

Query: 511 ISVGNEPC--IVTTLRDITQQQRSEAALK 537
           +   ++    +V  + D++ +++ E  L+
Sbjct: 496 VRDSDDSVTHVVAFISDLSVRRKIEERLR 524