Pairwise Alignments
Query, 1096 a.a., histidine kinase from Pseudomonas fluorescens FW300-N2E3
Subject, 953 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS
Score = 401 bits (1031), Expect = e-115
Identities = 256/682 (37%), Positives = 378/682 (55%), Gaps = 35/682 (5%)
Query: 420 SLFQVSPDPICVTRQDTGQFIEINPAFTQIFGWTTTDVIDRSADEIGLWDASVKRQQRIE 479
+L + P P+ + G+++ N AF G +++ +S ++D + K I
Sbjct: 281 TLIEAIPSPLFY-KDAQGRYVGCNEAFLTYLGKERHELLGKS-----VYDLAPKELADIY 334
Query: 480 QVIREQALNNVAIIVH-----HKDGQPLTCVISSRQI--SVGNEPCIVTTLRDITQQQRS 532
Q +N V+ + DG + + + G +V + DIT+++R
Sbjct: 335 AAADRQLFDNPGKQVYESQACYADGSKHDVIYNKATFMDAEGRVAGLVGVMVDITERKRQ 394
Query: 533 EAALKASEEKFAKAFHSSPDAITITERDSGRYLEVNDGFCRLTGYSADEVVGKTVYQIGI 592
E L+ + AK F +S +A +T+ D+ VN FC TGYSA+EV+G+ +
Sbjct: 395 EEELRLA----AKVFDTSNEAFLVTDADNN-IRSVNRAFCETTGYSAEEVLGRNPRLLSS 449
Query: 593 WAEEKQ-RSTLLAALKAKGRVHHQEMLGRNKRGEILTVEVSIEPITLNETACLLMTA--R 649
+K + AL ++G E+ R K GEI I + ++ + A
Sbjct: 450 GHHDKTFYRQMWEALNSQG-YWQGEIYDRRKSGEIYPKWTRINVVKDDQGRVVNHVAVFS 508
Query: 650 DVSLLKNAEAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRG----ALLFLDLD 705
D+S K E +++ LA HD LT LPNR LL RL Q + G ALL LDLD
Sbjct: 509 DISDRKALEERLQFLAQHDHLTGLPNRNLLRLRLEQAVESAMERGAGGINPVALLLLDLD 568
Query: 706 HFKHINDSLGHPVGDTVLKIITARLEASVRMEDTVARLGGDEFVVLLSGLEGTRNEVSEQ 765
HFK INDSLGH GD +L+ + RL+ +R T+ R GGDEF+++L + +
Sbjct: 569 HFKTINDSLGHHAGDQLLRTVVKRLKNILRESSTLCRQGGDEFLIVLPQAQDLA-----R 623
Query: 766 VRELADTLRELLSEPMFLDGQRLQVTPSIGVALIPDHGSTPTDLLKRADIALYRAKDSGR 825
V A+T+ L+ P +DG L +T SIG++L PD GS LLK+AD AL AK SGR
Sbjct: 624 VSRAAETVLAALATPFEVDGHPLSITGSIGISLAPDDGSDFDTLLKKADTALVHAKQSGR 683
Query: 826 NATQMFHNTMQKAASERLRMETDLRLALSRGEFSVQYQPQVDALDGRIIGAEALVRWRHP 885
NA + F M + ERL ++ L AL R E + YQPQ+D GR++G EAL+RWR P
Sbjct: 684 NAYRFFTEAMNVSTLERLTLQQRLHQALERQELVLYYQPQLDLASGRVVGVEALLRWRTP 743
Query: 886 RLGEQSPSEFIKVLEDSGLILEVGAWILDETCQAFRQLIDRGLIDPLNFSLCVNISPRQF 945
G P +FI + E++GLI+ +GAW++ E C+ R +D GL P+ ++ VN+S QF
Sbjct: 744 E-GLVPPGKFIPLAEETGLIVPMGAWVIQEACRQARTWLDAGL-PPM--TMAVNLSALQF 799
Query: 946 RQNDFVERIEQTLSSHGLPYSLLKLEVTEGIVIQNLDDTISKMRRLKKLGVSFAMDDFGT 1005
+++ + + LS+ LP + L+LE+TE I+IQ+ + T++ ++ + +GV ++DDFGT
Sbjct: 800 HRDNLLITVGDALSAASLPAASLELELTESILIQDAEATLATLKAMNAMGVLLSIDDFGT 859
Query: 1006 GYSSLTYLKRLPVDTLKIDQSFIRDATSDPNDAEIIRAIVAMARSLELTVIAEGVETTEQ 1065
GYSSL YLKR VD LKIDQSF+RD TSD + A I+RA+V MA SL+L IAEGVET Q
Sbjct: 860 GYSSLAYLKRFTVDKLKIDQSFVRDITSDGDSAAIVRAVVQMASSLKLKTIAEGVETESQ 919
Query: 1066 LDFLQGLGCHLYQGYLHSQPLP 1087
L+ GC QGYL+++P+P
Sbjct: 920 AAALRATGCDEVQGYLYARPMP 941
Score = 42.0 bits (97), Expect = 2e-07
Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 11/205 (5%)
Query: 83 DLLPVEDRAKTLRAFNAVVAGAPLEQAMHHRIRWPDGSLHWLEINGSLIPDKQGRPR-MI 141
DL P E A A + + P +Q + + DGS H + N + D +GR ++
Sbjct: 324 DLAPKE-LADIYAAADRQLFDNPGKQVYESQACYADGSKHDVIYNKATFMDAEGRVAGLV 382
Query: 142 GVIREITHQRQREQALSSSEKRFATLFHLCPNMVLLTRQEDGLISEANQYFESLFGWPVH 201
GV+ +IT ++++E+ L + K F T N L D I N+ F G+
Sbjct: 383 GVMVDITERKRQEEELRLAAKVFDT-----SNEAFLVTDADNNIRSVNRAFCETTGYSAE 437
Query: 202 SVIGRTTLELGLWVNPEQ-RAKLVKATKAKGELVSMEVQFRASNGQVHDGILSAQKVELE 260
V+GR L + + ++ +A ++G E+ R +G+++ V+ +
Sbjct: 438 EVLGRNPRLLSSGHHDKTFYRQMWEALNSQGYWQG-EIYDRRKSGEIYPKWTRINVVKDD 496
Query: 261 GQPYL--LSTFLDTSERKLAEQALK 283
+ ++ F D S+RK E+ L+
Sbjct: 497 QGRVVNHVAVFSDISDRKALEERLQ 521
Score = 36.2 bits (82), Expect = 1e-05
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Query: 335 FEGVPDDERDSMRDAYRSLREGPAGNYQLTYRVQLPDGSSRYLESRARLYRDESGVPLRM 394
++ P + D A R L + P G + DGS + + D G +
Sbjct: 323 YDLAPKELADIYAAADRQLFDNP-GKQVYESQACYADGSKHDVIYNKATFMDAEGRVAGL 381
Query: 395 AGTLLDITDQVEREQRLITSEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQIFGWTT 454
G ++DIT++ +E+ L + A +F S + VT D +N AF + G++
Sbjct: 382 VGVMVDITERKRQEEELRLA----AKVFDTSNEAFLVTDAD-NNIRSVNRAFCETTGYSA 436
Query: 455 TDVIDRS 461
+V+ R+
Sbjct: 437 EEVLGRN 443