Pairwise Alignments

Query, 1096 a.a., histidine kinase from Pseudomonas fluorescens FW300-N2E3

Subject, 896 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  401 bits (1030), Expect = e-115
 Identities = 272/760 (35%), Positives = 398/760 (52%), Gaps = 83/760 (10%)

Query: 391  PLRMAGTLLDITDQVERE------QR---LITSEEKFASLFQVSPDPICVTRQDTGQFIE 441
            P  + G   D+T  VE E      QR   L  S  +F +LF+++PD + V R + G+ ++
Sbjct: 149  PGAVLGLAFDVTALVEAEIEEEVRQRTAALAESTARFRALFELAPDAVYV-RGEGGRIVD 207

Query: 442  INPAFTQIFGWTTTDVIDRSADEIGLWDASVKRQQRIEQVIREQALNNVAIIVHHKDGQP 501
             N A  ++ G     ++     ++   D  V    RI+ ++    L     +  H D  P
Sbjct: 208  CNRAAERMSGHPRETLLSLRTADLLPPDIEV----RIDNLLTGCPLP----VATHPDSTP 259

Query: 502  L---------------------------TCVISSRQISVGNEPCIVTTLR---------- 524
                                        T      +  V  EP  ++ LR          
Sbjct: 260  AEPRQGTDGANPGSGFCPTGGFCMEGICTAAHGPHEAEVSVEPLPLSLLRGKGMTALVVV 319

Query: 525  -DITQQQRSEAALKASEEKFAKAFHSSPDAITITERDSGRYLEVNDGFCRLTGYSADEVV 583
             DI+ ++ +E   +     F + F ++ + I IT+ + G  + VN  F  +TGY AD+ V
Sbjct: 320  HDISGRRTAERQARL----FERVFRNALEGICITDPE-GIIVAVNPAFTTITGYPADDAV 374

Query: 584  G------KTVYQIGIWAEEKQRSTLLAALKAKGRVHHQEMLGRNKRGEILTVEVSIEPIT 637
            G      K+ +    + E+  R     AL  +GR    E+  R + GE+    +SI  I 
Sbjct: 375  GQSPRLLKSHHHDSAFYEDMWR-----ALVEEGR-WEDEIWNRRRNGEVYPEWLSISAIP 428

Query: 638  --LNETACLLMTARDVSLLKNAEAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNL 695
                 T   +    D++ LK  E+QI+H A+HD LT LPNRALL DRL   I   +R + 
Sbjct: 429  GPTGRTEYYVAVFHDITELKAKESQIQHQAHHDALTGLPNRALLRDRLGMAINGARREDR 488

Query: 696  RGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRMEDTVARLGGDEFVVLLSGL 755
            + A+L +DLD+FK +NDSLGH VGD  L+    ++   VR +DT+AR+GGDEFVV+L  +
Sbjct: 489  KVAVLSVDLDNFKQVNDSLGHMVGDIYLQQAAEQMRQMVRPQDTLARVGGDEFVVVLQDV 548

Query: 756  EGTRNEVSEQVRELADTLRELLSEPMFLDGQRLQVTPSIGVALIPDHGSTPTDLLKRADI 815
            EG R+       ++A+ L    ++P+ +    L V  S+G+AL PD G  P  L++ ADI
Sbjct: 549  EGERDAA-----QVAERLLARFTDPVRVQEHELFVGASVGIALFPDDGDDPDTLVRNADI 603

Query: 816  ALYRAKDSGRNATQMFHNTMQKAASERLRMETDLRLALSRGEFSVQYQPQVDALDGRIIG 875
            A+ RAK+ G+    +F   M   A  RL +E DL  AL+ G+ +  YQP+VD   G I G
Sbjct: 604  AMSRAKEQGKRRYHLFTPAMNDRAVRRLSLEGDLHRALAAGDITAHYQPRVDLNTGLITG 663

Query: 876  AEALVRWRHPRLGEQSPSEFIKVLEDSGLILEVGAWILDETCQAFRQLIDRGLIDPLNFS 935
             EAL RW      ++ P+EFI + E +GLI+ +G  +L   C   R L D G  D     
Sbjct: 664  MEALARWIRADGSQEHPAEFIPLAESTGLIVPLGEHMLRLACAKTRALCDAGHAD---LH 720

Query: 936  LCVNISPRQFRQNDFVERIEQTLSSHGLPYSLLKLEVTEGIVIQNLDDTISKMRRLKKLG 995
            + VN+S  QFR  + V  +   L+  GLP  LL+LE+TE  ++ ++D TI K+ +L ++G
Sbjct: 721  VAVNLSVHQFRHRNLVGMVADVLAETGLPPHLLELEITESTIVTDVDHTIRKLNQLAEMG 780

Query: 996  VSFAMDDFGTGYSSLTYLKRLPVDTLKIDQSFIRDATSDPNDAEIIRAIVAMARSLELTV 1055
            ++ ++DDFGTGYSSL  LK LP+ +LKID+SFIRD   DPNDA I   I+ MA  L L V
Sbjct: 781  IALSVDDFGTGYSSLYQLKNLPLTSLKIDRSFIRDIPDDPNDAAIAATIITMADRLGLRV 840

Query: 1056 IAEGVETTEQLDFLQGLGCHLYQGYLHSQPLPLEGFLKLL 1095
            +AEGVET EQL+FL   GCH  QG+L S+PLP + F  LL
Sbjct: 841  VAEGVETPEQLNFLLLEGCHEVQGFLFSRPLPPDEFTALL 880



 Score = 39.3 bits (90), Expect = 1e-06
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 10/91 (10%)

Query: 130 LIPDKQGRPRMIGVIREIT---------HQRQREQALSSSEKRFATLFHLCPNMVLLTRQ 180
           L P+  G   ++G+  ++T           RQR  AL+ S  RF  LF L P+ V + R 
Sbjct: 142 LPPEVAGPGAVLGLAFDVTALVEAEIEEEVRQRTAALAESTARFRALFELAPDAVYV-RG 200

Query: 181 EDGLISEANQYFESLFGWPVHSVIGRTTLEL 211
           E G I + N+  E + G P  +++   T +L
Sbjct: 201 EGGRIVDCNRAAERMSGHPRETLLSLRTADL 231