Pairwise Alignments

Query, 1096 a.a., histidine kinase from Pseudomonas fluorescens FW300-N2E3

Subject, 1505 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  406 bits (1043), Expect = e-117
 Identities = 243/642 (37%), Positives = 370/642 (57%), Gaps = 32/642 (4%)

Query: 469  DASVKRQQRIEQVIREQALNNVAII-----VHHKDGQPLTCVISSRQISVGNE--PCIVT 521
            +A  + ++R +QV+ +    +         + H  G  L  +   + +   N+  P  +T
Sbjct: 878  NAHPEDRERFKQVLTDHLQGHTPFFEMEYRIEHSPGNWLWILERGKVVETNNQEQPMRMT 937

Query: 522  -TLRDITQQQRSEAALKASEEKFAKAFHSSPDAITITERDSGRYLEVNDGFCRLTGYSAD 580
             T R+IT ++  E  L  S +      +S  +A+ +   D  R   VN  F  +TGYS  
Sbjct: 938  GTTRNITSRKLIENELVLSSQ----VLNSMNEAVVVAGLDY-RIRSVNPAFSAITGYSER 992

Query: 581  EVVGKTVYQIGIWAEEKQRSTLLAALKAKGRVHHQEMLG----RNKRGEILTVEVSIEPI 636
            ++  K +  +   A  +Q+  L  +++ +  + H+   G    RN+  + + V + I  +
Sbjct: 993  QISDKYLIHL---AYSRQQRDLFNSIEQQ-LLRHKHWAGEIWIRNRARKAILVWLEINQV 1048

Query: 637  --TLNETACLLMTARDVSLLKNAEAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHN 694
                 ET+  +    D++  K AE  +R LA  D LT LPNR L  DRL+  I+   R N
Sbjct: 1049 IDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSN 1108

Query: 695  LRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRMEDTVARLGGDEFVVLLSG 754
               ALLFLDLD FKHINDS+GH +GD +LK +  RL+ +VR  DTVARLGGDEF ++L G
Sbjct: 1109 NIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQNAVREGDTVARLGGDEFTIILEG 1168

Query: 755  LEGTRNEVSEQVRELADTLRELLSEPMFLDGQRLQVTPSIGVALIPDHGSTPTDLLKRAD 814
            +  T+         +++ + +    P  LD + L ++ SIG++L P+       L+K AD
Sbjct: 1169 VAKTKAATL-----ISEKVLKAFQAPFLLDDKSLTISTSIGISLYPNDAEDVDSLIKFAD 1223

Query: 815  IALYRAKDSGRNATQMFHNTMQKAASERLRMETDLRLALSRGEFSVQYQPQVDALDGRII 874
             A+Y AK  GRN  Q + N + + A+  +++E  L+ A+SR E S+ YQP+     G + 
Sbjct: 1224 TAMYHAKALGRNNFQFYTNKLNEMATRHVQLEAGLKQAISRNELSLVYQPKFCLRKGSLT 1283

Query: 875  GAEALVRWRHPRLGEQSPSEFIKVLEDSGLILEVGAWILDETCQAFRQLIDRGLIDPLNF 934
            G EAL+RW H  LG  SP+EFI + E++G+I ++G W+++  CQ   +  + G  D    
Sbjct: 1284 GLEALLRWHHSELGPISPAEFIPLAEETGIINQIGHWVINHACQQLAEWNELGFGD---I 1340

Query: 935  SLCVNISPRQFRQNDFVERIEQTLSSHGLPYSLLKLEVTEGIVIQNLDDTISKMRRLKKL 994
            S+ VN+S RQ +  D +  IE  LS  GLP   L+LE+TE +++ N  ++++ + +LK L
Sbjct: 1341 SMAVNLSARQLKA-DIISTIEVALSVSGLPAKALELELTESMIMGNPQESVNILSKLKAL 1399

Query: 995  GVSFAMDDFGTGYSSLTYLKRLPVDTLKIDQSFIRDATSDPNDAEIIRAIVAMARSLELT 1054
            G++ A+DDFGTGYSSL+YLKR P+DTLKID+ F+RD T+DP+DA I  AI+A+A SLEL 
Sbjct: 1400 GLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELN 1459

Query: 1055 VIAEGVETTEQLDFLQGLGCHLYQGYLHSQPLPLEGFLKLLK 1096
            V+AEGVET EQL+FL   GC   QG+L S+PL  +  L LL+
Sbjct: 1460 VVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCLALLQ 1501



 Score = 62.0 bits (149), Expect = 3e-13
 Identities = 59/267 (22%), Positives = 116/267 (43%), Gaps = 24/267 (8%)

Query: 279  EQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGSARAAQLHGLDPIPFHEPFDAFFEGV 338
            E +++ S+ERL LAL ++  G WDW+I    +Y      + H   P+          +  
Sbjct: 826  ETSIRASEERLKLALWASGDGMWDWNIQEQQVY------RTHTDIPVSQWSSHTLLHDNA 879

Query: 339  PDDERDSMRDAYRSLREGPAGNYQLTYRVQLPDGSSRYLESRARLYR-DESGVPLRMAGT 397
              ++R+  +       +G    +++ YR++   G+  ++  R ++   +    P+RM GT
Sbjct: 880  HPEDRERFKQVLTDHLQGHTPFFEMEYRIEHSPGNWLWILERGKVVETNNQEQPMRMTGT 939

Query: 398  LLDITDQVEREQRLITSEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQIFGWTTTDV 457
              +IT +   E  L+ S +   S+     + + V   D  +   +NPAF+ I G++   +
Sbjct: 940  TRNITSRKLIENELVLSSQVLNSM----NEAVVVAGLDY-RIRSVNPAFSAITGYSERQI 994

Query: 458  IDRSADEIGLWDASVKRQQR-----IEQVIREQALNNVAIIVHHKDGQPLTCVISSRQI- 511
             D+      L   +  RQQR     IEQ +         I + ++  + +   +   Q+ 
Sbjct: 995  SDKY-----LIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNRARKAILVWLEINQVI 1049

Query: 512  -SVGNEPCIVTTLRDITQQQRSEAALK 537
               G     V    DIT+++++E  L+
Sbjct: 1050 DVKGETSHFVAVFTDITERKKAEEDLR 1076



 Score = 32.3 bits (72), Expect = 3e-04
 Identities = 42/203 (20%), Positives = 83/203 (40%), Gaps = 15/203 (7%)

Query: 88   EDRAKTLRAFNAVVAGAPLEQAMHHRIRWPDGSLHWLEINGSLIP-DKQGRP-RMIGVIR 145
            EDR +  +     + G      M +RI    G+  W+   G ++  + Q +P RM G  R
Sbjct: 882  EDRERFKQVLTDHLQGHTPFFEMEYRIEHSPGNWLWILERGKVVETNNQEQPMRMTGTTR 941

Query: 146  EITHQRQREQALSSSEKRFATLFHLCPNMVLLTRQEDGLISEANQYFESLFGWPVHSVIG 205
             IT ++  E  L  S +   ++     N  ++    D  I   N  F ++ G+    +  
Sbjct: 942  NITSRKLIENELVLSSQVLNSM-----NEAVVVAGLDYRIRSVNPAFSAITGYSERQISD 996

Query: 206  RTTLELGLWVNPEQRAKLVKATKAKGELVSMEVQFRASNGQVHDGILS----AQKVELEG 261
            +  + L            ++    + +  + E+  R    +    IL      Q ++++G
Sbjct: 997  KYLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIR---NRARKAILVWLEINQVIDVKG 1053

Query: 262  QP-YLLSTFLDTSERKLAEQALK 283
            +  + ++ F D +ERK AE+ L+
Sbjct: 1054 ETSHFVAVFTDITERKKAEEDLR 1076