Pairwise Alignments

Query, 557 a.a., RNA helicase from Pseudomonas fluorescens FW300-N2E3

Subject, 556 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  912 bits (2358), Expect = 0.0
 Identities = 472/558 (84%), Positives = 514/558 (92%), Gaps = 3/558 (0%)

Query: 1   MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF 60
           MTQE GGFAA  ++  +LAA+ A GYEEPS IQ Q+IP+I+ GHDMIGQAQTGTGKTAAF
Sbjct: 1   MTQEIGGFAALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAF 60

Query: 61  ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK 120
           ALPIL +IDPA++E QALILAPTRELALQVATAFETY+KQMPG+TVVAVYGGAPMGPQLK
Sbjct: 61  ALPILSKIDPARKEVQALILAPTRELALQVATAFETYSKQMPGLTVVAVYGGAPMGPQLK 120

Query: 121 AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPAT 180
           AIR GAQ++VATPGRL DHL R+  +L+T+  LVLDEADEMLKLGFMDDLEVIF+A+P +
Sbjct: 121 AIRQGAQVIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPES 180

Query: 181 RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
           RQTVLFSATLP SIRAIAE+HLR+PQH+KI  KTQTV  IEQAHL+VHADQK  AVL LL
Sbjct: 181 RQTVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLL 240

Query: 241 EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV 300
           EVEDFDALI FVRTKQATLDLA+ALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
Sbjct: 241 EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV 300

Query: 301 ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI 360
           ATDVAARGLDV RITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
Sbjct: 301 ATDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI 360

Query: 361 ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL 420
           ERVT QKVAE RLP+AQ VLDARIKKLTNSL+PLVADAE+THG+LLD+L ADIGC+PRAL
Sbjct: 361 ERVTNQKVAEARLPNAQQVLDARIKKLTNSLAPLVADAEATHGELLDKLVADIGCSPRAL 420

Query: 421 AAALLRKATNAQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDR-GDRERRAPIPLAEG 479
           AAALLRKATN QALTLA +E+E+PLVP ++PR +R ER+ DRP+R GDRERRAP+PLAEG
Sbjct: 421 AAALLRKATNGQALTLAEVEREQPLVPTSSPR-ERTERS-DRPERSGDRERRAPVPLAEG 478

Query: 480 RARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKL 539
           RARCRT LGARDGIAA+NLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLL KL
Sbjct: 479 RARCRTPLGARDGIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLGKL 538

Query: 540 KDTRVAGKQLKLRRYRED 557
           KDTRV GKQLKLRRYRED
Sbjct: 539 KDTRVGGKQLKLRRYRED 556