Pairwise Alignments

Query, 557 a.a., RNA helicase from Pseudomonas fluorescens FW300-N2E3

Subject, 499 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  290 bits (743), Expect = 7e-83
 Identities = 156/367 (42%), Positives = 226/367 (61%), Gaps = 7/367 (1%)

Query: 8   FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHR 67
           FA   L+  +L+AV   GY  P+ IQ  +IP  +   D++G AQTGTGKTA+F LP+L  
Sbjct: 4   FADLGLSQKVLSAVTDAGYTIPTPIQVGAIPPALQRRDILGIAQTGTGKTASFVLPMLTL 63

Query: 68  IDPAK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124
           ++  +   R P+ LIL PTRELA QVA  F+ Y K    + +  + GG     Q + +  
Sbjct: 64  LEKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHK-LNIALLIGGVSFDEQDRKLER 122

Query: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPATRQTV 184
           GA +++ TPGRL DH  R + ++  V  LV+DEAD ML +GF+ D+E I K +P TRQT+
Sbjct: 123 GADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTL 182

Query: 185 LFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHA-DQKTSAVLSLL--E 241
            FSAT+P  I+ +A+R L++P+ +++  ++ T   + Q  +  H  D +  AVL  L   
Sbjct: 183 FFSATMPPEIQKLADRFLQNPERLEVARRSSTAITVTQRFVAAHGKDYEKRAVLRELIRS 242

Query: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301
            ED    I+F   K+   +L  +L+  G+   AL+GD+ Q  R  ++ + KDG + ++VA
Sbjct: 243 QEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIKLLVA 302

Query: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361
           +DVAARGLD+P ++HVFN D+P   E YVHRIGRTGRAGR G A  +VT RE +    IE
Sbjct: 303 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFTIVTKRETKFSDAIE 362

Query: 362 RVTGQKV 368
           ++ GQKV
Sbjct: 363 KLIGQKV 369