Pairwise Alignments

Query, 557 a.a., RNA helicase from Pseudomonas fluorescens FW300-N2E3

Subject, 563 a.a., Probable cold-shock DeaD-box protein A homolog DeaD (ATP-dependent RNA helicase dead homolog) from Mycobacterium tuberculosis H37Rv

 Score =  444 bits (1141), Expect = e-129
 Identities = 253/550 (46%), Positives = 340/550 (61%), Gaps = 22/550 (4%)

Query: 8   FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHR 67
           FA   ++P +L A+   GYE P+AIQ  +IP +MAG D++G AQTGTGKTAAFA+P+L +
Sbjct: 15  FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74

Query: 68  IDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQ 127
           ID   + PQAL+L PTRELALQVA AF  Y   +  + V+ +YGG+    QL  +R GAQ
Sbjct: 75  IDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQ 134

Query: 128 IVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPATRQTVLFS 187
           +VV TPGR+ DHL R    L+ V+ LVLDEADEML +GF DD+E I    P  +Q  LFS
Sbjct: 135 VVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFS 194

Query: 188 ATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDA 247
           AT+P +IR ++ ++L DP  V  + KT     I Q+++ V   +K  A+  +LEVE F+A
Sbjct: 195 ATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQV--ARKMDALTRVLEVEPFEA 252

Query: 248 LIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAAR 307
           +I+FVRTKQAT ++A  L A+G+ AAA++GD+ Q QRER I +L+DG +DI+VATDVAAR
Sbjct: 253 MIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAAR 312

Query: 308 GLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQK 367
           GLDV RI+HV N D+P+D ESYVHRIGRTGRAGR G AL+ V+PRE  +L+ IE+ T Q 
Sbjct: 313 GLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQT 372

Query: 368 VAEVRLPDAQAVLDARIKKLTNSL-SPLVADAESTHGDLLDRLTADIGCTPRALAAALLR 426
           + E +LP  + V   R+ K  +S+ + L          L++    +       +AAAL  
Sbjct: 373 LTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALAV 432

Query: 427 KATNAQALTLAAIEKERPLVPNNA-PRGDRPERTGDRPDRGDRERRAPIPLAEGRARCRT 485
           +    +A  +A    + PL   N   R DRP+R   RPD                   R 
Sbjct: 433 QCRGGEAFLMA---PDPPLSRRNRDQRRDRPQRPKRRPD---------------LTTYRV 474

Query: 486 ALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLKDTRVA 545
           A+G R  I    ++GAI NEGGL R   G+I++   FSLVELP       L KL  TR++
Sbjct: 475 AVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRIS 534

Query: 546 GKQLKLRRYR 555
           G  + LR YR
Sbjct: 535 GVLIDLRPYR 544