Pairwise Alignments

Query, 432 a.a., mechanosensitive ion channel protein MscS from Pseudomonas fluorescens FW300-N2E3

Subject, 416 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score =  309 bits (792), Expect = 9e-89
 Identities = 157/392 (40%), Positives = 256/392 (65%), Gaps = 9/392 (2%)

Query: 25  SSLALMVLLVIALLLGRVARYVVLHAVKLLGRQPAMQWFNDLFQNKVFHRLAQMTPSLVI 84
           + + +   L+IA +   V +  V+  + ++ ++  ++W +   Q++V  +LA++ P+L++
Sbjct: 27  TGVMVFACLLIAFIGYVVVKRGVVSTMNIVIQRSKVRWDDIFMQHRVLEKLAKLVPALIL 86

Query: 85  QFGLNLV----PELSKTIQNFLGNVALSFTILFLVLALSALLNAMLDIYARTEHARTRSI 140
              L L     P LS      L +VA+   ++  V A+ ++L+A  +I    + +R   I
Sbjct: 87  NILLPLALVEHPLLSSLADRLL-DVAI---VILFVRAVYSVLDAGNEIADVNQISRRLPI 142

Query: 141 KGYVQLAKMVLFVFGAIIIVATLIDRSPLLLLSGLGAMSAVILLVYKDTLLSFVASVQLT 200
           K +VQL K+ +F    +I ++ L ++SP+  LSGLG  + +++LV+KDT+L FVA +QL 
Sbjct: 143 KSFVQLLKLFMFFVAIVISISVLAEQSPVYFLSGLGVATGLVMLVFKDTILGFVAGIQLA 202

Query: 201 SNDMLRVGDWIEMPQVGADGDVVDITLHTVKVQNFDKTIVSIPTWRLMSESFKNWRGMQQ 260
           +N M+  GDWI+M + GADG V +++L TVKVQN+DKTI  IP + L+S++FKNWRGM +
Sbjct: 203 ANRMVSPGDWIQMDKYGADGAVEEVSLTTVKVQNWDKTITMIPAYALVSDAFKNWRGMSE 262

Query: 261 SGGRRIKRSLFIDASGVRFIHDDEEQKLTQVRLLTDYISRKQAELKSWNEAQGNVAAMSA 320
           SGGRRIKR++ ID   + F+ D++ ++L ++ LL +Y++RK+ E+  +N A+     M  
Sbjct: 263 SGGRRIKRAVNIDIDSIAFLSDEQLKRLGKINLLKEYLARKEVEIAEFN-AKIQDGDMPV 321

Query: 321 NRRRMTNIGTFRAYALAYLKSHPEIQPNMTCMVRQMQTTAQGVPLEIYCFTRTTAWADYE 380
           N R +TN+GTFRAY L Y++ HP++   MT +VRQ+  T +G+P+EIY FT  T WA YE
Sbjct: 322 NSRNLTNVGTFRAYLLEYMRKHPKVHQEMTLLVRQLAPTTEGLPIEIYIFTNDTRWAFYE 381

Query: 381 RIQGDIFDYLLAVLPEFGLSLYQQPSGGDLRA 412
            IQ DIFD++ A+LP+F L  +Q P+G D+R+
Sbjct: 382 DIQADIFDHIYAILPQFNLRAFQAPTGADVRS 413