Pairwise Alignments

Query, 377 a.a., ribonuclease D from Pseudomonas fluorescens FW300-N2E3

Subject, 385 a.a., ribonuclease D from Marinobacter adhaerens HP15

 Score =  197 bits (501), Expect = 4e-55
 Identities = 128/366 (34%), Positives = 195/366 (53%), Gaps = 9/366 (2%)

Query: 5   IHWIRDNDSLGQFCAQWQQLPFVALDTEFMRVDTFYPIAGLLQIG-DGERAFLIDPLTID 63
           I WIR+  +L ++  +    P +ALDTEF RV+TFYPI GL+Q+G DGE   L+DP   +
Sbjct: 20  IDWIREPQALDKWLDRAPGKP-LALDTEFERVNTFYPIPGLVQLGLDGEFC-LVDPSVAE 77

Query: 64  NWQPLAQLLENPAVVKVLHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGFSMGYSRL 123
                 ++L +P   K+L+A SEDLE+  +     PA + D Q+ AA    GFS+GY+RL
Sbjct: 78  QSGRFREVLADPDTPKLLYAMSEDLELFRQWLNLQPAGVIDLQIGAAMAGAGFSLGYARL 137

Query: 124 VSEVLGIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAEVFVHLRPKLSDEKY-AWVLE 182
           V  + G  L K  TRSDWL RPLS+ Q  YA +D   L  ++  +   L D    A ++E
Sbjct: 138 VETLFGETLDKSATRSDWLARPLSDAQQRYAIDDIRFLEPMYHWVSALLRDRGLEAALVE 197

Query: 183 DGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREHEARARDLPRNRIVRE 242
           + A     L  + DP   Y + +  W LS  Q  VL+EL  WRE E + RD PRNR++ +
Sbjct: 198 ESARFANELAGQEDPDNHYLKLRAGWTLSAQQQGVLKELVRWRERECQRRDRPRNRVLAD 257

Query: 243 HSLWPLARTQPDNLGALAKIEDMHPRTVRQDGEFLLGLIKQAGSVPPDQWPPAVPEPLPV 302
             L  +A   P ++  L+ I+ +    VR+ G+ L+ L+ + GS   +     +  PL  
Sbjct: 258 ALLIAIAERLPASVKELSNIQGVPSGAVRRYGDTLIELVSR-GSTADNSSLERIAPPLSR 316

Query: 303 EAAALVKRLRALGQAEAERLNIAPELMLRKKTLEALLKSGFPEGPYQLPDSLRGWRRELM 362
           +     K+L+ L +  AE  +I  EL+  +K LE +++    +      D  +GWR +++
Sbjct: 317 DQQGFFKQLKRLFRNAAEDADIPMELLAPRKRLEKVVQ----QPDLAQHDFFQGWRAQIL 372

Query: 363 GQALLD 368
                D
Sbjct: 373 APVRAD 378



 Score = 24.3 bits (51), Expect = 0.006
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 128 LGIDLPKGETRSDWLQRP 145
           + +D+P   TR DW++ P
Sbjct: 9   VAVDVPPAPTRIDWIREP 26