Pairwise Alignments

Query, 377 a.a., ribonuclease D from Pseudomonas fluorescens FW300-N2E3

Subject, 216 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 43.5 bits (101), Expect = 5e-09
 Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 5/157 (3%)

Query: 5   IHWIRDNDSLGQFCAQWQQLPFVALDTEFMRVDT---FYPIAGLLQIGDGERAFLIDPLT 61
           IH I+      +  A  Q  P + +D+E     T    + +A LLQI   E  FL     
Sbjct: 24  IHVIQSEAETEKAVAYLQSQPILGIDSETRPSFTKGQSHKVA-LLQISSDECCFLFRLNM 82

Query: 62  IDNWQPLAQLLENPAVVKVLHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGFSMGYS 121
               QPL  LLENPAV+KV  +  +D  +L +          + Q       +       
Sbjct: 83  TGLTQPLVDLLENPAVIKVGLSLKDDFMMLHKRAPFTQQSCIELQDYVRQFGIQ-DKSLQ 141

Query: 122 RLVSEVLGIDLPKGETRSDWLQRPLSETQISYAAEDA 158
           ++ + +    + K +  S+W    LS+ Q  YAA DA
Sbjct: 142 KIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATDA 178