Pairwise Alignments

Query, 236 a.a., RNA-binding protein from Pseudomonas fluorescens FW300-N2E3

Subject, 254 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella amazonensis SB2B

 Score = 58.2 bits (139), Expect = 2e-13
 Identities = 63/239 (26%), Positives = 99/239 (41%), Gaps = 20/239 (8%)

Query: 6   RLSKRLIELVGCSRREAELFIEGGWVTVDGEVIDEPQFKVDTQKVELDPEAKATAPEPVT 65
           RL K L E    SRR A   IE G V +DG+         D+ +V +D      A     
Sbjct: 11  RLCKYLAEAGVASRRGASRLIETGRVCIDGQQASHSDRVFDSNRVTVDGAPLCPAQAKAY 70

Query: 66  ILLHAPAGMDAETALQLIGPETLSEEHRFSKRPLKGHFLRLTASADLQANASGLLVFTQD 125
            L H P G+D    L+   P +L          L G  LRL  +  L  ++ GLL+ T D
Sbjct: 71  FLYHKPVGIDCR--LRAEDPHSLI-------HCLPGD-LRLFPAGRLDKDSRGLLLLTND 120

Query: 126 WKILRKLTADASKIEQEYVVEVEGDMVAHGLNRLTHGPSY-KGKELPAV---------KA 175
            ++ ++L       ++ Y++ +        +  +  G  Y +G   P V           
Sbjct: 121 GELTQRLMHPDFHHQKGYLITLNKAPQPDDIAAIAAGFDYGEGPTRPCVVEAAIDCGYAT 180

Query: 176 SWQNENRLRFAMKNPQPGIIALLCQAVGLKVVAIRRIRIGGVSIGKVPVGQWRYLSAKE 234
              N  +LR  +   +   I  L +A G +V+ + R  I  ++IGK+  G+ R L+A E
Sbjct: 181 EDGNPRKLRMRLTEGKKRQIRRLWRARGYRVLDLLRESIQQLNIGKLEQGEIRSLTASE 239