Pairwise Alignments

Query, 350 a.a., recombinase RecA from Pseudomonas fluorescens FW300-N2E3

Subject, 357 a.a., recA protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  491 bits (1265), Expect = e-144
 Identities = 247/350 (70%), Positives = 293/350 (83%), Gaps = 3/350 (0%)

Query: 1   MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRI 60
           +D NK+KALAA L QIE+QFGKG++M++G+     +  ISTGSL LD+ALG GGLP GRI
Sbjct: 3   VDPNKEKALAAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRI 62

Query: 61  VEIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDT 120
           VEIYGPESSGKTTLTL VIA AQ+ G TCAF+DAEHALDP YA KLGV++D+LL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDT 122

Query: 121 GEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGN 180
           GEQALEI D L RS AVDVIIVDSVAAL PKAEIEGE+GD H+GL AR+MSQA+RK+ GN
Sbjct: 123 GEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 181 IKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE 240
           +K +N L+IFINQIRMKIGVMFG+PETTTGGNALKFYASVRLDIRRTGA+KEGDEVVG+E
Sbjct: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE 242

Query: 241 TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQG 300
           TRVKVVKNKVA+PF+QAEFQILYG+GI   GE++DLGV H  +EK+GAWY+Y G KIGQG
Sbjct: 243 TRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQG 302

Query: 301 KANSAKFLQDNPDIAATLEKQIRDKLLTPTPDVKASPVKETADDLADADI 350
           +AN+ K+L +NP IAA ++K +R+ LL+  P   AS   +  DD  + +I
Sbjct: 303 RANAGKYLTENPAIAAEIDKTLRELLLS-NPSALASSASD--DDNVEGNI 349