Pairwise Alignments

Query, 444 a.a., chemotaxis protein CheY from Pseudomonas fluorescens FW300-N2E3

Subject, 380 a.a., Response regulator containing a CheY-like receiver domain and an HD-GYP domain from Pseudomonas stutzeri RCH2

 Score =  103 bits (256), Expect = 1e-26
 Identities = 90/359 (25%), Positives = 169/359 (47%), Gaps = 34/359 (9%)

Query: 2   DEPLKPRVLLVDDEESILNSLRRLLRGQPYEVLLATSGTQA-LEIMEQQPVDLVMTDARM 60
           DE     V+++DD  + L  L   +R    + ++A S + A L  ++Q   DL++ D  M
Sbjct: 4   DEIRHSTVVVIDDITASLRLLESSVRAIGVQRIMAFSDSAAGLAWLQQNDWDLLLLDVDM 63

Query: 61  PNMDGATLLAHIHEHYPDTVRILLTGYADLSMIIKAINEGQIHRYISKPWNDEEMLLTLR 120
           P  +G  +L  +     + + ++++  +D      ++  G  + +ISKP +  E+LL +R
Sbjct: 64  PAPNGFDILRSLSGREHNRMVVMVSALSDRESRCSSLKLGA-NDFISKPLDLPELLLRVR 122

Query: 121 QSLAYQLSERERLRLVQLTWDQNEQLKLLNVSLEKRVAARTAELQQTADMLDLAYEELKH 180
             L             QL+W  ++QLK+   +LE++V  RT              E+L  
Sbjct: 123 NQL-------------QLSW-ASKQLKIERETLERKVCERT--------------EQLNA 154

Query: 181 SYVTGTEVFSLLANLRLPPAKQTNRQIIDLVRIYCQTHGLDEASSRDLTMAAALYNIGKL 240
           SY +     S  A  +     Q   +I +   +     G        + +AA ++++GK+
Sbjct: 155 SYQSVICSLSRAAQYKDDETGQHIIRIGESAALIAAALGQPAEWVERIRLAAPMHDVGKI 214

Query: 241 SWTDGMMTTPSDLLHHPERELYRGYPKQSESLLMTLEP---MKDAARLILHHQERWDGSG 297
              D ++  P  L    ER++ + + +   ++L   E    ++ AA + L+H ERWDG+G
Sbjct: 215 GIPDHILLKPGTLTDL-ERKIMQRHTQIGHAILRDGEESPLLEMAAEIALYHHERWDGTG 273

Query: 298 FPDRLKGEAIPLGSRLLKLAVDFIELQCGLILERNMNSDEALLFIRKYTGRFYDPELVE 356
           +P  LKGE IPL +R++ L   +  L+     + + + + A  +I +  G ++DP LV+
Sbjct: 274 YPHGLKGEEIPLAARVVALCDVYDALRSPRPYKESWSKERAQAYICEQAGLYFDPALVD 332