Pairwise Alignments

Query, 467 a.a., poly(A) polymerase from Pseudomonas fluorescens FW300-N2E3

Subject, 438 a.a., polyA polymerase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  392 bits (1006), Expect = e-113
 Identities = 204/431 (47%), Positives = 288/431 (66%), Gaps = 9/431 (2%)

Query: 31  HSLQRAQFSRYAVNIVERLQSAGYQAYLVGGCVRDMLLNITPKDFDVATSATPEQVRAEF 90
           HS+ R Q S  A+ ++ RL  AG+QAYLVGG VRD+LL + PKDFDV T+ATPE+++  F
Sbjct: 9   HSISRKQISENALKVLYRLNKAGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLF 68

Query: 91  RNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDEEEDSNQSSRNESGRILRDNVYGTL 150
           RN R++GRRF+L HI FGR++IEVATFR +H +++E+     S  N  GR+LRDNVYG +
Sbjct: 69  RNCRVVGRRFRLAHIVFGRDVIEVATFRGHHGESNEKI----SKANAEGRLLRDNVYGEI 124

Query: 151 EEDAQRRDFTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPTQRYQEDPVRMLRAVR 210
           +EDA+RRDFT+NALYYD     I  Y  G+ D++   +RLIGDP  RY+EDPVRMLRAVR
Sbjct: 125 DEDAERRDFTVNALYYDISDYSIRSYGGGMEDLKAGTLRLIGDPETRYREDPVRMLRAVR 184

Query: 211 FAAKLDFGIEKHSATPIRNLAPMLREIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDP 270
           FA KL   I++ +A PI+ LAP+L++IP+AR++EEVLKLF +G A   F+M+ + +LF P
Sbjct: 185 FATKLSMTIDEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAVANFDMMQEYKLFAP 244

Query: 271 LFPASAEALEHNPTYTHTLISEALI-NTDLRIKQNKPVTPAFLFAALLWPALPARVLRLQ 329
           LFP     L+  P      + +A++ +TD R+ ++KPVTP+F +AA+LW  L  R   + 
Sbjct: 245 LFPQVDALLKEAPKGPAMKMVQAIMKSTDDRVNEDKPVTPSFFYAAILWYPLRQRAEDIA 304

Query: 330 -DRGMPPIPAMQEAAHELISEQCQRIAIPKRFTMPIREIWDMQERLPRRSGKRADLLLDN 388
            + G+    A   A  +++ +QCQ I+IP+RF+ P ++IW +Q R  R  G RA  LL++
Sbjct: 305 VESGLTLYDAFFAAMGDVMEQQCQTISIPRRFSTPAKDIWQLQLRFERSQGTRAFKLLEH 364

Query: 389 PRFRAGYDFLLLR-ESAGEQTNGLGEWWTDYQDANESERRDMIR--DLSGKDDGASGAPR 445
           P+FRA YD LLLR E  G        WW  + +A+E+ER  + R  + +  +   +   R
Sbjct: 365 PKFRAAYDLLLLRGEVEGGNLAKSAAWWQQFVEADETERLTIARSGNKASGNRNRNTPQR 424

Query: 446 KRRRSGGAKRK 456
           +RRR  GAK K
Sbjct: 425 RRRRPSGAKAK 435