Pairwise Alignments

Query, 359 a.a., tRNA (uracil-5-)-methyltransferase from Pseudomonas fluorescens FW300-N2E3

Subject, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

 Score =  370 bits (949), Expect = e-107
 Identities = 182/361 (50%), Positives = 251/361 (69%), Gaps = 8/361 (2%)

Query: 6   QAYTAQLEEKATRLRDLLAPFDAPELAVFDSPLANFRLRAEFRLWREAGERHYAMFSQED 65
           + Y AQL +K  RL+ +   +  PEL VF+SP+AN+R+RAEFR+W E  + +Y MF+QE 
Sbjct: 9   ELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQET 68

Query: 66  KRTPILIEEFPIASQRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLCYHRP 125
            R    +++FP AS+ IN LMP L  A + S  L HKLFQV+FL+TL+G+ +++L YHR 
Sbjct: 69  -REKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 126 LDEHWHAAASKLAADLN-----VSVIGRSKGKREVIGHDYVVEKLEVGGRTFSYRQPEGA 180
           L E W  AA  L   LN     +++IGR++  + V+  DYVVE L+V G+ + Y+Q E +
Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENS 187

Query: 181 FTQPNGTVNQKMLNWAYDALGDRCDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNA 240
           FTQPN  V +KML WA D   +   DLLELYCGNGNF+L LA    +VLATE++K SV A
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247

Query: 241 ALSNLSENAVDNVTLVRLSAEELTEALNEVRPFRRLH--GIDLKSYEFGSVFVDPPRAGM 298
           A  N++ N + NV ++R+SAEE T+A+   R F RL   G+DL+SY   ++FVDPPR+GM
Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307

Query: 299 DPDTCELTRRFENILYISCNPETLAANIAQLHDTHRITRCAMFDQFPWTHHMESGVLLTR 358
           D DTC++ + +E ILYISCNPETL  N+  L +TH++ R A+FDQFP+THHME+GV+L R
Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367

Query: 359 R 359
           +
Sbjct: 368 K 368