Pairwise Alignments

Query, 754 a.a., DNA topoisomerase IV from Pseudomonas fluorescens FW300-N2E3

Subject, 743 a.a., Gram negative topoisomerase IV, subunit A (NCBI) from Rhodospirillum rubrum S1H

 Score =  503 bits (1295), Expect = e-146
 Identities = 290/746 (38%), Positives = 443/746 (59%), Gaps = 27/746 (3%)

Query: 12  VERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLDADSKHKKSA 71
           +    L++     YL Y++  I+ R+LP + DGLKPV RR++YAM  L LD  S  KK A
Sbjct: 12  IRETPLSEALSERYLAYALSTIVSRSLPDVRDGLKPVHRRLLYAMRMLKLDPGSGFKKCA 71

Query: 72  RTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEAR 131
           R VGDV+GK+HPHGD+A YEAMV +AQ F+ RY LV+GQGN+G  D   + AAMRYTEAR
Sbjct: 72  RVVGDVIGKYHPHGDAAVYEAMVRLAQEFAVRYPLVEGQGNFGNIDGDNA-AAMRYTEAR 130

Query: 132 LSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIAVGMATDVPPHN 191
           L+  +  L+  L     D+ P +DG   EP+V+PA  PN+L NG++GIAVGMAT++PPHN
Sbjct: 131 LTAVASALMEGLDDDAVDFRPTYDGEDHEPVVMPAAFPNLLANGSSGIAVGMATNIPPHN 190

Query: 192 LREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKIYETGRGSVRMRAV 251
           + E+  A + L+  P    E L   ++GPD+PT   +      + + Y TGRG++R+RA 
Sbjct: 191 VGELCEALLHLIKVPACPPEALLSFVKGPDFPTGGVLAEHPQAIAEAYRTGRGAMRLRAR 250

Query: 252 YHIED-----GDIVVTALPHQVSGAKVLEQIAAMMQAKPSKAPQVADLRDESDHENPCRI 306
           +  E+       IV+T +P+Q+  AK++E+IA ++  +  K P +AD+RDES  +   R+
Sbjct: 251 WEKENLSHGLYQIVITEIPYQIQKAKLVERIAELINGR--KLPILADVRDESADD--LRL 306

Query: 307 VIIPVNSRVDHEALMQHLFASTELESSYRVNINIIGLDGKPQLKNLRALLVEWLEFRVQT 366
           V+ P N  VD E LM+ LF  T+LE  + +N+N++  DG P++  L+  LV +L+ R+  
Sbjct: 307 VLEPRNRTVDAETLMEQLFRLTDLEIRFNLNMNVLDGDGVPKVLGLKEALVAFLDHRLVV 366

Query: 367 VRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHPKAKLIERFALSEIQADYI 426
           + RR + RL K+E RL +L G LIAYLNLDEVI IIR E+ PK  L+  F LS++Q + I
Sbjct: 367 LGRRSRHRLGKIEHRLEVLAGTLIAYLNLDEVIRIIREEDEPKPALMAAFGLSDVQTEAI 426

Query: 427 LDTRLRQLAKLEEMKLRGEQDELLKEQAKLQALLGSETKLKKLVRSELIKDAETYGDD-- 484
           L+ RLR L +LEEM++R E D L  E+A L+ALL  E    K++  ++ +  +T+G D  
Sbjct: 427 LNMRLRSLRRLEEMEIRREHDALSAEKAGLEALLADEGLCWKVIAKQIRETRKTFGGDTA 486

Query: 485 ---RRSPIVERAEAKALTEHDLLPNEKVTVVLSEKGWVRSAKGHDIDATGLSYKAGDGFK 541
              RR+ +     A  +    L+  E +TV+LSE+GW+R+ KGH        +K GD   
Sbjct: 487 LGRRRTELGSAPTAVIVPIEALVEREPITVLLSERGWLRAVKGHQEPGEENKFKEGDALL 546

Query: 542 TAAAGRSNQFAVFIDSTGRSYSVPAHTLPSARGQGEPLTGRLTPPPGATFECVLMPEDDG 601
            A   ++    + +DSTGR +++PA  L   RG GEP+   L  P  A    +L+ +   
Sbjct: 547 LALHAQTTDKLLILDSTGRFFTLPADKLARGRGFGEPVRLMLDLPNDADIVSLLVHDPAR 606

Query: 602 LYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVILPRPVADREQNWLASVTTEGR 661
             ++A+  G GFVV+ +D+ A+ +AGK ++++    + +L R V     + +A +    +
Sbjct: 607 RLILAASGGRGFVVEEKDVLAQTRAGKQVMTVDAGERALLCREV---RGDHVAVIGQNRK 663

Query: 662 LLIFKISDLPQLGKGKGNKIIGISGERVASREEYVTDIAVLPEGATLVLQAGKRTLSLKA 721
           LL+F ++ +P L +GK     G+  +R   ++  + DI        L  ++G+RT +   
Sbjct: 664 LLVFPLTQVPVLARGK-----GVILQRY--KDGGIADIKTFAIADGLTWKSGERTRT--E 714

Query: 722 DDLEHYKGERGRRGNKLPRGFQRVDA 747
            DL  + G+R   G   P+GF R ++
Sbjct: 715 SDLTAWLGDRAGLGRLPPQGFPRTNS 740