Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV from Pseudomonas fluorescens FW300-N2E3

Subject, 686 a.a., DNA topoisomerase IV subunit B from Sinorhizobium meliloti 1021

 Score =  450 bits (1157), Expect = e-130
 Identities = 269/632 (42%), Positives = 376/632 (59%), Gaps = 26/632 (4%)

Query: 3   TPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHATSV 59
           T   S Y+A AIEVL GL+PVR+RPGMY   TD    +HL  EVIDNS+DEA+AGHA  +
Sbjct: 41  TSDGSDYDASAIEVLEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFI 100

Query: 60  QVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGLHGV 118
            V L AD  L V+D+GRG+PV+ HP+  G S +E+++T LHAGGKF  K Y+ SGGLHGV
Sbjct: 101 DVNLDADGYLTVTDNGRGIPVENHPKFPGKSTLEVVMTVLHAGGKFDGKAYETSGGLHGV 160

Query: 119 GISVVNALSTQVRVRVKRDGNEYQMTFADGYKATDLEVVGTVGKRNTGTSVYFAPDPKYF 178
           G+SVVNALS  + V V R+   Y+  F+ G     LE +G V  R  GT V F PDP+ F
Sbjct: 161 GVSVVNALSDDLEVEVARNRRLYRQRFSRGIAQGGLEDLGDVHNRR-GTRVRFHPDPQIF 219

Query: 179 DS-PKFSISRLKHVLKAKAVLCPGLLVSF--------EDKATGEKVEWHYEDGLRSYLVD 229
               +F  +RL  + ++KA L  G+ + +        E     ++  +H+  GL+ YL  
Sbjct: 220 GPHARFEPARLFRMARSKAYLFGGVEIRWSCDPALLPEGSEIPDRAVFHFPGGLKDYLAA 279

Query: 230 AVSEFERLPDEPFCGSL--AGNKEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNGL 287
            + +   +  E F G    +G   +++WA+ W   GGD    SY N IPT +GGTH  GL
Sbjct: 280 TLGKEFTVTREIFAGKSEKSGGHGSLEWAVTWY--GGDQQIHSYCNTIPTPEGGTHEAGL 337

Query: 288 RQGLLDAMREFCEFRSLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAA 347
           R  L   ++ + E      R   +  +DV    A +LS+ ++EP+F GQTK++L++ EA 
Sbjct: 338 RIALTKGLKNYAELTQN-KRAAIVTTDDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQ 396

Query: 348 AFVSGVVKDAFSLWLNANPELGLQLAELAINNAGRRLKA--SKKVERKRITQGPALPGKL 405
             V   ++D F  +L  NP    +L +  +  A  R++    K+V RK   +   LPGKL
Sbjct: 397 RIVENALRDPFDHYLADNPAEAAKLLDWVVERAEERVRRRKEKEVSRKTAVRKLRLPGKL 456

Query: 406 ADCAGQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEV 465
           ADCA      +ELF+VEGDSAGGSAKQAR++  QAILPLRGKILN       ++ A+Q++
Sbjct: 457 ADCAQNTAEGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQI 516

Query: 466 HNIAVAIGVDPGAADMSQ-LRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVY 524
            ++  A+G    +    + LRY +I I+ DAD DG HIA+LL   F Q    L+  GH+Y
Sbjct: 517 GDLVQALGCGTRSKYREEDLRYERIIIMTDADVDGAHIASLLITFFYQEMPELIRGGHLY 576

Query: 525 VAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETT 584
           +A+PPLYR+  G +  YA D+A R+ ++        RGK ++ RFKGLGEM P QL+ETT
Sbjct: 577 LAVPPLYRLSQGSKTLYARDDAHREELM--RTEFNGRGKVELGRFKGLGEMLPAQLKETT 634

Query: 585 MDPNTRRLVQLTLD--DFEATSEMMDMLLAKK 614
           MDP  R L+++ +D  DFE T + +D L+  K
Sbjct: 635 MDPAKRTLLKVEIDDVDFEGTRDAVDSLMGTK 666