Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV from Pseudomonas fluorescens FW300-N2E3

Subject, 675 a.a., DNA gyrase (subunit B) GyrB (DNA topoisomerase (ATP-hydrolysing)) (DNA topoisomerase II) (type II DNA topoisomerase) from Mycobacterium tuberculosis H37Rv

 Score =  424 bits (1090), Expect = e-123
 Identities = 263/654 (40%), Positives = 373/654 (57%), Gaps = 60/654 (9%)

Query: 9   YNADAIEVLSGLDPVRKRPGMYTDTSRP---NHLAQEVIDNSVDEALAGHATSVQVILHA 65
           Y A +I +L GL+ VRKRPGMY  ++     +HL  EV+DN+VDEA+AG+AT+V V+L  
Sbjct: 12  YGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGYATTVNVVLLE 71

Query: 66  DHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVNA 125
           D  +EV+DDGRG+PV  H   G+  V++++T+LHAGGKF +  Y  SGGLHGVG+SVVNA
Sbjct: 72  DGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHGVGVSVVNA 130

Query: 126 LSTQVRVRVKRDGNEYQMTFADGYKATDLEVVGTVGKRNTGTSVYFAPDPKYFDSPKFSI 185
           LST++ V +KRDG E+   +    K+  L +      + TG++V F  DP  F++ ++  
Sbjct: 131 LSTRLEVEIKRDGYEWSQVYE---KSEPLGLKQGAPTKKTGSTVRFWADPAVFETTEYDF 187

Query: 186 SRLKHVLKAKAVLCPGLLVSFED--------------------KATGEKVE--------- 216
             +   L+  A L  GL ++  D                    K+  E+           
Sbjct: 188 ETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHKVK 247

Query: 217 ---WHYEDGLRSYLVDAVSEFERLPDE------PFCGSLAGNKEAVDWALLWLPEGGDSV 267
              +HY  GL    VD V    R  +        F G   G++  V+ A+ W     +SV
Sbjct: 248 SRTFHYPGGL----VDFVKHINRTKNAIHSSIVDFSGKGTGHE--VEIAMQWNAGYSESV 301

Query: 268 QESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRSLLP-RGVKLAPEDVWERIAFVLSM 326
             ++ N I T +GGTH  G R  L   + ++ + R LL  +   L  +D+ E +A V+S+
Sbjct: 302 H-TFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 360

Query: 327 KMQEPQFSGQTKERLSSREAAAFVSGVVKDAFSLWLNANPELGLQLAELAINNAGRRL-- 384
           K+ EPQF GQTK +L + E  +FV  V  +  + W  ANP     +   A+++A  R+  
Sbjct: 361 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 420

Query: 385 -KASKKVERKRITQGPALPGKLADCAGQDPMRSELFLVEGDSAGGSAKQARDKEFQAILP 443
            KA + V RK  T    LPGKLADC   DP +SEL++VEGDSAGGSAK  RD  FQAILP
Sbjct: 421 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 480

Query: 444 LRGKILNTWEVDGSEVLASQEVHNIAVAIGVD-PGAADMSQLRYGKICILADADSDGLHI 502
           LRGKI+N  +     VL + EV  I  A+G       D+ +LRY KI ++ADAD DG HI
Sbjct: 481 LRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADADVDGQHI 540

Query: 503 ATLLCALFVQHFRPLVDAGHVYVAMPPLYRIDLGK-EIYYALDEAERDGILDR-LVAEKK 560
           +TLL  L  +  RPL++ GHV++A PPLY++   + +  +A  + ERDG+L+  L A KK
Sbjct: 541 STLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKK 600

Query: 561 RGKPQ-VTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFEATSEMMDMLLAK 613
             K   + R+KGLGEM+  +L ETTMDP+ R L Q+TLDD  A  E+  +L+ +
Sbjct: 601 INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGE 654