Pairwise Alignments

Query, 739 a.a., primosomal protein N' from Pseudomonas fluorescens FW300-N2E3

Subject, 731 a.a., primosomal protein N from Phaeobacter inhibens DSM 17395

 Score =  409 bits (1052), Expect = e-118
 Identities = 273/742 (36%), Positives = 393/742 (52%), Gaps = 45/742 (6%)

Query: 13  PLRRLFDYRAPAGVLRAHLHPGMRLRVPFGRREMIGILVEVTSHSEVPADKLKPALALLD 72
           PL R  DYRAP G      H G  + VP G R ++G++    +  +  + KL+P   +LD
Sbjct: 20  PLDRCLDYRAPEG----GCHLGAYVEVPLGPRRVLGVIWGPGA-GDFDSAKLRPVNRVLD 74

Query: 73  ATPPLPASLFKLCLWTSQYYQHSLGDTLSWALPVLLRQGELAEARQERFWS---ITPGAK 129
             P              Q+   S   TL+  LP +LR    A    +       + P  +
Sbjct: 75  VAPMRDEM--------RQFLTKSADYTLT-PLPAMLRLATRAPGLSDPVSMRKVLRPTGQ 125

Query: 130 LDDPRIARAPRQREALATLAQHPHGVAHQLLSKLMLSKDSLDLLLAKELV-QVDIRKHAP 188
           + D    R    RE + +  +   G+A    +K +     +   + K LV Q  +R+   
Sbjct: 126 MPD----RMTDARERVLSAVEEYGGLA--FTAKELADLAGVTTSVVKGLVKQGALREEEA 179

Query: 189 GERHEHWLAQPELP---LNPEQRAAYEAIRAGFDS--FHAFLLAGVTGSGKTEVYLQLIR 243
                +    P+LP   L  +Q AA   +  G     +   LL GVTGSGKTEVYL+ + 
Sbjct: 180 PRDLPYPRLDPDLPGKTLTEDQAAAANTLGEGVAGGRYGTTLLKGVTGSGKTEVYLEAVA 239

Query: 244 ETLEAGKQALVLIPEINLGPQTLARFEQRFNARIALVHSAVNDRERLESWLAARDGEADI 303
            TL AG+QALVL+PEI L  + L R EQRF A  A  HS     ER   W     G+A +
Sbjct: 240 ATLRAGRQALVLLPEIALTAEFLKRVEQRFGATPAEWHSGATMTERRRVWRMVGQGKAQL 299

Query: 304 IIGTRSALFTPMKNPGLIIIDEEHDGSYKQQEGLRYHARDLALVRARQENIPIVLGSATP 363
           +IG RSALF P +N GLII+DEEHD SYKQ EG+ Y+ARD+A++RA   +  +VL SATP
Sbjct: 300 VIGARSALFLPYQNLGLIIVDEEHDTSYKQDEGVCYNARDMAVLRAAMCSAQVVLASATP 359

Query: 364 SLESLHNAYTGRYGLLRLNERAGGAKQPRFLRLDVKSR--PLDSGISGPMQQAIGQTLAA 421
           SLE+  NA  G+Y  L L  R G A  P    +D+++   P  + IS  ++QA+   +  
Sbjct: 360 SLETWANAEAGKYKRLDLAARFGSAVLPEMRAIDMRAEKLPASTWISPTLKQAMTARIER 419

Query: 422 GQQVLVFLNRRGFAPTLLCHDCGWMSECQRCDARMTVHQRSGELRCHHCGYVERVPRHCP 481
           G+Q L+FLNRRGFAP  +C  CG    C  CD+RM  H+    L CH CG  + VP  CP
Sbjct: 420 GEQSLLFLNRRGFAPVTICRACGGHVTCDHCDSRMVEHRFMKRLMCHQCGETKPVPDACP 479

Query: 482 KC---GKVDLRPVGAGTERAEERLGILFPDYPVLRVDRDSTSRKDAMNQLFATIQKGQPC 538
            C   GK  + PVG G ER  E    LFP+  +  +  D  +   A+ Q    I  G+  
Sbjct: 480 TCQVEGK--MAPVGPGIERLGEETAALFPEARIAVLSSDLFASARALKQRIEEIAAGEAD 537

Query: 539 ILVGTQMLAKGHHFPRVTLVSILDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGKV 598
           I++GTQ++AKGH+FP +TLV ++DAD GL   D RA+ER  QL+ QVAGRAGRA++PG+ 
Sbjct: 538 IILGTQLVAKGHNFPLLTLVGVIDADLGLQGSDLRAAERTFQLMRQVAGRAGRADKPGEA 597

Query: 599 IIQTHLADHPLLVQLTEQGYFAFAEQALSERRSAGLPPFAHLA-LLRAEAHKPGQAEGFL 657
           ++QT   +HP++  +      AF     +ER++AG+PP+  +A ++ +    P   +  L
Sbjct: 598 LMQTFQPEHPVIRAILSGDEEAFWRAEAAERQAAGVPPYGRMAGIVLSGPELPAVMD--L 655

Query: 658 DEACSEAERLLDEHNLTGIELLGPVPAPMERRAGRYRAQLLLQASARAPLHRLLSAWLLA 717
             A +  +  L +    G ++ GP PAP+ R  GR+R +LL++AS   PL   ++ W+  
Sbjct: 656 GMALARNDGPLRQ---IGAQVFGPAPAPIARIRGRHRVRLLIKASKGTPLQDAIARWIKP 712

Query: 718 LEQMPSGRAVRWSLDVDPVDLY 739
                    +R S+D+DP + +
Sbjct: 713 ARLKGD---LRLSVDIDPQNFF 731