Pairwise Alignments

Query, 361 a.a., histidine kinase from Pseudomonas fluorescens FW300-N2E3

Subject, 348 a.a., nitrogen regulation protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  290 bits (742), Expect = 4e-83
 Identities = 162/344 (47%), Positives = 222/344 (64%), Gaps = 5/344 (1%)

Query: 11  LLDNLTTATILLNADLRLEYMNPAAEMLLAISGQRSHGQFISELFTESTEALNSLRQAVE 70
           LL++L TA ++++ DL+  Y N AAE LL +   R   Q + E +         L  AV+
Sbjct: 6   LLNHLVTAVLVIDKDLKPCYANAAAEQLLGVGSHRLVEQALPEHYQALGVDTQLLSDAVK 65

Query: 71  QAHPFTKREAMLTALTGQTLTVDYAVTPILSNGDTLLLLEVHPRDRLLRITKEEAQLSKQ 130
                T   A L  L  Q  TVD  + P L +   L LLE+   D+  RI ++ +Q ++Q
Sbjct: 66  AGQSLTVNTATLVTLDAQHHTVDLTLIP-LEDEALLSLLELRQVDQQRRIHQQLSQDAQQ 124

Query: 131 ETSKMLVRGLAHEIKNPLGGIRGAAQLLARELPEESLKDYTNVIIEEADRLRNLVDRMLG 190
           + ++ LVR LAHEIKNPLGG+RGAAQLL+REL + + K++TN+IIE+ADRLR+LVDR+LG
Sbjct: 125 QAAQFLVRNLAHEIKNPLGGLRGAAQLLSRELDDPAQKEFTNLIIEQADRLRSLVDRLLG 184

Query: 191 SNKLPSLALCNVHEVLERVCHLVEAESQGCITLVRDYDPSIPDVLIDREQMIQAVLNIVR 250
             +    +L N+H+V+++V  LVE      I L RDYDPSIPD+ +D +QM QAVLNI++
Sbjct: 185 PQRPTQHSLHNIHQVVQKVYKLVEIALPANIQLKRDYDPSIPDIEMDPDQMQQAVLNILQ 244

Query: 251 NAMQAISTQNELRLGRITLRSRAMRQFTIGHVRHRLVTKLEIIDNGPGIPADLQETIFFP 310
           NA+QA+   +    G I +R+R   Q TIG  RH+LV  L IIDNGPGIP +L +T+F+P
Sbjct: 245 NAVQALEHTD----GEILIRTRTQHQVTIGSQRHKLVLTLSIIDNGPGIPPELMDTLFYP 300

Query: 311 MVSGRPDGTGLGLAITQNIISQHQGLIECDSHPGHTTFSIFLPL 354
           MV+ R  G+GLGL+I  NI   H G I+C S PGHT F I LP+
Sbjct: 301 MVTSREQGSGLGLSIAHNIARLHSGRIDCVSSPGHTEFIISLPI 344